Factsheet for Bra017634.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017635.1-P	Field mustard	plasma membrane	79.72	45.07
CDY49285	Canola	golgi, plasma membrane	65.57	23.76
Bra011300.1-P	Field mustard	cytosol	37.26	20.68
Bra033628.1-P	Field mustard	nucleus	34.91	18.93
Bra011856.1-P	Field mustard	nucleus	16.98	18.85
Bra011854.1-P	Field mustard	plastid	33.49	18.25
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	23.58	18.18
Bra018362.1-P	Field mustard	cytosol	32.08	18.04
Bra023735.1-P	Field mustard	nucleus	31.6	17.91
Bra001343.1-P	Field mustard	nucleus	22.17	17.67
Bra032688.1-P	Field mustard	cytosol	29.25	17.56
Bra022509.1-P	Field mustard	cytosol	27.83	17.4
Bra002939.1-P	Field mustard	cytosol	15.57	17.28
Bra036150.1-P	Field mustard	plastid	30.19	17.25
Bra040886.1-P	Field mustard	cytosol	31.6	17.22
Bra011852.1-P	Field mustard	cytosol	27.36	16.25
Bra030332.1-P	Field mustard	cytosol	29.72	16.11
Bra011855.1-P	Field mustard	plastid	18.87	16.06
Bra011853.1-P	Field mustard	cytosol	31.13	16.06
Bra040994.1-P	Field mustard	cytosol	6.6	15.56
Bra006063.1-P	Field mustard	cytosol	13.21	15.14
Bra000083.1-P	Field mustard	extracellular	25.0	15.06
Bra029716.1-P	Field mustard	mitochondrion	24.53	14.73
Bra029718.1-P	Field mustard	nucleus	27.36	14.61
Bra011851.1-P	Field mustard	cytosol, plastid	28.3	14.46

Protein Annotations

EnsemblPlants:Bra017634.1	EnsemblPlants:Bra017634.1-P	EnsemblPlantsGene:Bra017634	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23
PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256	SUPFAM:SSF117281	UniParc:UPI00025411F9
UniProt:M4DMA2	MapMan:35.1	:	:	:	:

Description

AT4G23580 (E=6e-015) | kelch repeat-containing F-box family protein

Coordinates

chrA03:+:29442784..29443815

Molecular Weight (calculated)

24882.3 Da

IEP (calculated)

10.002

GRAVY (calculated)

-0.266

Length

212 amino acids

Sequence
(BLAST)

001: MSSTTIASTT AMKVEVLPVL TLLMLPEELI LSCLVRVPRL YYPTLTLVSK SFRSLINSPE LFIDGVSSSS VFVMDTHYHT WCKAPRGWGK LDYTNWMEVF
101: DTKIRTWEFM PSLGSESFDY ENMALEGSIY VRSNEKGETF KLNKVRWRAA DLALTRGWSY NWKRKWREVK RLKGRLPMSS KNDHYRLADY GGNLVFLWEE
201: LVHILRMFKT KR

Best Arabidopsis Sequence Match ( AT4G34170.1 )
(BLAST)

001: MDDGEELPVK TMLMLHDDLI LNCLARVSRS NHPTLSLVCK RFHSLLASVE LYQTRTLLGR TERCFYRQYS SRKILVQILS PNSTSAGIAV VGPNIDAIGG
101: GIKSNTLSSV MVMDSRSHTW REAPSMRVPR MFPSVCTLDG KIYVMGGCDN LDSTNWMEVF DTKTQTWEFL QIPSEEIFGG SAYESVRYEG TVYVWSEKKD
201: VTYKLHEGRW SAADMSANGW GWPGSSYCVI ENVLYSCFVH KIRWYDPKER VWTPLKGLPS LPCNGHVKLA DYGEKMVILW EKYVDVDEKK MIW

Arabidopsis Description

Putative F-box/kelch-repeat protein At4g34170 [Source:UniProtKB/Swiss-Prot;Acc:O49488]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.