Factsheet for Bra011855.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41984	Canola	cytosol	96.39	62.66
Bra011853.1-P	Field mustard	cytosol	67.47	40.88
AT4G39590.1	Thale cress	plastid	51.41	31.84
Bra040994.1-P	Field mustard	cytosol	11.24	31.11
Bra006063.1-P	Field mustard	cytosol	21.69	29.19
Bra011851.1-P	Field mustard	cytosol, plastid	47.39	28.43
Bra033628.1-P	Field mustard	nucleus	42.97	27.37
Bra011854.1-P	Field mustard	plastid	40.96	26.22
Bra002939.1-P	Field mustard	cytosol	20.08	26.18
Bra011852.1-P	Field mustard	cytosol	36.95	25.77
Bra036150.1-P	Field mustard	plastid	38.15	25.61
Bra023735.1-P	Field mustard	nucleus	37.75	25.13
Bra032688.1-P	Field mustard	cytosol	35.34	24.93
Bra040886.1-P	Field mustard	cytosol	37.75	24.16
Bra030332.1-P	Field mustard	cytosol	37.75	24.04
Bra029716.1-P	Field mustard	mitochondrion	32.53	22.95
Bra017635.1-P	Field mustard	plasma membrane	34.54	22.93
Bra011300.1-P	Field mustard	cytosol	34.54	22.51
Bra022509.1-P	Field mustard	cytosol	30.52	22.42
Bra001343.1-P	Field mustard	nucleus	23.69	22.18
Bra018362.1-P	Field mustard	cytosol	33.33	22.02
Bra029718.1-P	Field mustard	nucleus	32.53	20.4
Bra000083.1-P	Field mustard	extracellular	28.51	20.17
Bra017634.1-P	Field mustard	extracellular	16.06	18.87
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	18.88	17.09
Bra011856.1-P	Field mustard	nucleus	9.24	12.04

Protein Annotations

EnsemblPlants:Bra011855.1	EnsemblPlants:Bra011855.1-P	EnsemblPlantsGene:Bra011855	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23
PFAM:PF01344	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0002546051	UniProt:M4D5U8	MapMan:35.1

Description

AT4G39590 (E=1e-061) | kelch repeat-containing F-box family protein

Coordinates

chrA01:-:217461..218210

Molecular Weight (calculated)

28120.5 Da

IEP (calculated)

4.986

GRAVY (calculated)

-0.169

Length

249 amino acids

Sequence
(BLAST)

001: MSLVAVGSNI YRIGGDMPSS SRVWVLDCRF NTWHRAPRMR LKRSSPAASL IDGKIYVAGG CEDPSSVNWI EVFDPKTRTW GNVANPGTET RPGASVRSFG
101: IGGKLYIRGD EYVVYDPKEA SWNPIGLGID MAFAASFNHC VIGDVMFLWD DDREFRWYDS KASSWKKLNG VEDLPNFYGY CKMVDHGGKK MALLWEGYLR
201: SEFVVWCAEI ALEMRDGDEM WGIVEWLDVV LSLNEPFRLF DANVLSATV

Best Arabidopsis Sequence Match ( AT4G11745.1 )
(BLAST)

001: MVHFAIIDEK LLVSVPIRNY CPRFGLKNII TLGSNIYMIG EFSSTVFFMD CRSHTWHEGP GMQVAAKYNE VSVLDGKIYV VERCKVSVSS NLIQVFDPKT
101: QIWECVASPS TGIRGRFGLN SLAIDGKLYL FGDKNLVYKP KEKTWDVVGF EINFHWIPHD SFCVIDKVII YYYNRHSRLL EWYDPEGSSW GILNGLEELL
201: PKLPRVLVSR HVRLVDYGGK VAIFWEKEVR PLIGYNKITI WCAEIALERR NAQEIYGKIE WCNVVLTLPS SCSIDELNAV SIIV

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.