Factsheet for Bra023735.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68916	Canola	nucleus	73.53	89.87
CDY09006	Canola	nucleus	71.66	87.87
Bra001343.1-P	Field mustard	nucleus	37.7	53.01
Bra011856.1-P	Field mustard	nucleus	25.13	49.21
AT5G38680.1	Thale cress	cytosol	46.79	49.02
Bra036150.1-P	Field mustard	plastid	48.4	48.79
Bra011854.1-P	Field mustard	plastid	48.4	46.53
AT4G25710.1	Thale cress	cytosol	47.86	45.9
Bra033628.1-P	Field mustard	nucleus	45.19	43.22
Bra032688.1-P	Field mustard	cytosol	40.64	43.06
Bra000083.1-P	Field mustard	extracellular	39.84	42.33
Bra029716.1-P	Field mustard	mitochondrion	39.84	42.21
Bra006063.1-P	Field mustard	cytosol	20.86	42.16
Bra040994.1-P	Field mustard	cytosol	9.63	40.0
Bra022509.1-P	Field mustard	cytosol	36.1	39.82
Bra029718.1-P	Field mustard	nucleus	42.25	39.8
Bra030332.1-P	Field mustard	cytosol	40.91	39.13
Bra011855.1-P	Field mustard	plastid	25.13	37.75
Bra018362.1-P	Field mustard	cytosol	37.43	37.14
Bra017635.1-P	Field mustard	plasma membrane	36.36	36.27
Bra011852.1-P	Field mustard	cytosol	34.22	35.85
Bra040886.1-P	Field mustard	cytosol	36.1	34.7
Bra011853.1-P	Field mustard	cytosol	37.7	34.31
Bra011300.1-P	Field mustard	cytosol	34.76	34.03
Bra011851.1-P	Field mustard	cytosol, plastid	37.7	33.98
Bra017634.1-P	Field mustard	extracellular	17.91	31.6
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	22.99	31.27
Bra002939.1-P	Field mustard	cytosol	12.83	25.13

Protein Annotations

EnsemblPlants:Bra023735.1	EnsemblPlants:Bra023735.1-P	EnsemblPlantsGene:Bra023735	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002543D8D	UniProt:M4E4N2	MapMan:35.1	:

Description

AT5G51250 (E=5e-087) | kelch repeat-containing F-box family protein

Coordinates

chrA01:+:19465988..19467142

Molecular Weight (calculated)

41623.0 Da

IEP (calculated)

8.189

GRAVY (calculated)

-0.141

Length

374 amino acids

Sequence
(BLAST)

001: MSSSPEKKKE KKLEEELPST PQPNPTPSLP DELLTSCIAR LSRLYYPTLS LVSKNFRSLL ASPELYKARS LSFRTESCLY LCLESSSDSR WFTLCRKPDK
101: NKYDVSKNKS TSYALCKLPS LHSPPAVFSG LVSVGSDIYN IRSSSNVSVL DCRFHTWRKA PSLPVELMSL SACAVDEKIY VAGIHGGSLK NASKVLDART
201: QTWDHVVSIP CSLTRRGALN MRSVCIDGKP HVATDDGVVC YNSQVGKWEL GEAKMGSFRF SDSYCEVENV LYSVCDGTLR WYDGEVNVWR SLEGLVGLPK
301: FLPGVSVRLC DYGGNMVVVW DKNMLSSGEK KILCAEIALE RRGVWEIWGG VEWVEHVLTV PIGYYIVKAL SAMV

Best Arabidopsis Sequence Match ( AT5G51250.1 )
(BLAST)

001: MSSLPDDLLL SIFARISRLY YPTLSLVSKS FRSLLASPDL YKARSLLGHT ESCLYVCFHF DSGPNTHWFT LCRKPDGTLT NDTSKKKKSN GYVLATVPIP
101: HSPPANFSSL VAVGSDIYNI GGSIYLGPSS SSVSILDSQS HMWREAPSLR VELMSHSASV LDRKIYVAGS YKDGNGDSNS CKNLFEVFDT KTQVWHPEPI
201: PCSKTKGIFY SKSACIDGKF HVETTHGVVY AYKEGRWDKA IPTMFGMRAS YSFCEINNVL FYIHRGVFRW YDTKLRMWRI LKGLLGLPSL PENMFVRLAD
301: YGGKMAVLWE EDRPSCGAGG RDEMMIWCAV IALKRHLNFS FWGKVEWFDH VLTVPKQHVF VKALTASL

Arabidopsis Description

F-box/kelch-repeat protein At5g51250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.