Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- plasma membrane 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G51250.1 | Thale cress | cytosol | 48.97 | 51.9 |
| AT5G38680.1 | Thale cress | cytosol | 47.18 | 51.54 |
| Bra001343.1-P | Field mustard | nucleus | 35.13 | 51.5 |
| CDY09006 | Canola | nucleus | 40.0 | 51.15 |
| AT3G08810.1 | Thale cress | nucleus | 44.1 | 50.15 |
| CDY68916 | Canola | nucleus | 38.97 | 49.67 |
| AT3G09750.1 | Thale cress | mitochondrion | 20.26 | 49.07 |
| AT1G19930.1 | Thale cress | cytosol | 42.56 | 48.26 |
| Bra023735.1-P | Field mustard | nucleus | 45.9 | 47.86 |
| CDY00653 | Canola | cytosol | 40.0 | 47.13 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 33.85 | 45.36 |
| AT4G39550.1 | Thale cress | nucleus | 45.13 | 44.9 |
| AT2G03460.1 | Thale cress | plastid | 29.23 | 44.36 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 44.87 | 44.3 |
| AT4G39560.1 | Thale cress | plastid | 30.0 | 43.98 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 42.56 | 42.56 |
| AT5G49000.2 | Thale cress | nucleus | 40.51 | 42.47 |
| AT4G39600.2 | Thale cress | plastid | 40.77 | 42.06 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 39.23 | 41.13 |
| AT4G05620.1 | Thale cress | plastid | 13.85 | 40.91 |
| AT4G39580.1 | Thale cress | cytosol | 39.23 | 40.8 |
| AT4G34170.1 | Thale cress | cytosol | 29.74 | 39.59 |
| AT1G60570.1 | Thale cress | cytosol | 36.92 | 37.8 |
| AT4G39590.1 | Thale cress | plastid | 38.21 | 37.06 |
| AT4G11770.1 | Thale cress | cytosol | 37.18 | 36.62 |
| AT4G11750.1 | Thale cress | cytosol | 36.15 | 36.53 |
| AT1G77880.1 | Thale cress | cytosol | 12.05 | 36.15 |
| AT1G61540.1 | Thale cress | cytosol | 37.18 | 36.07 |
| AT3G43710.1 | Thale cress | cytosol | 34.36 | 35.45 |
| AT5G48980.1 | Thale cress | nucleus | 35.9 | 35.09 |
| AT2G20380.1 | Thale cress | cytosol | 31.28 | 35.06 |
| AT4G23580.1 | Thale cress | cytosol | 34.36 | 34.99 |
| AT4G33900.1 | Thale cress | cytosol | 33.08 | 34.04 |
| AT4G39290.1 | Thale cress | cytosol | 30.26 | 32.33 |
| AT4G11745.1 | Thale cress | cytosol | 23.08 | 31.69 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:828676 | ProteinID:AEE85101.1 | EMBL:AK176558 | ArrayExpress:AT4G25710 |
| EnsemblPlantsGene:AT4G25710 | RefSeq:AT4G25710 | TAIR:AT4G25710 | RefSeq:AT4G25710-TAIR-G | EnsemblPlants:AT4G25710.1 | TAIR:AT4G25710.1 |
| Unigene:At.3356 | EMBL:BT029546 | ProteinID:CAB43702.1 | ProteinID:CAB81381.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller |
| InterPro:Kelch_1 | InterPro:Kelch_2 | RefSeq:NP_194301.1 | PFAM:PF00646 | PFAM:PF01344 | PFAM:PF07646 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q9SZZ9 | SMART:SM00256 | SUPFAM:SSF117281 |
| SUPFAM:SSF81383 | UniParc:UPI000009E893 | SEG:seg | : | : | : |
Description
F-box/kelch-repeat protein At4g25710 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZZ9]
Coordinates
chr4:-:13098102..13099625
Molecular Weight (calculated)
43941.8 Da
IEP (calculated)
9.044
GRAVY (calculated)
-0.126
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MERLVSGETT TSSNMKKKKK KVSSTTNPSL PDDLVLVIIA RVSILYYPIL SLVSKSFRSL LASPELYKVR SLLGRRESRL YVCINMYSYK NGPSWFTLCR
101: KPDRTTTSSN KEEDRSSGYV LARIPIPHSP LTQRYSLAAV GSNIYNIGVT RYHHLTSSSV WVLDCRSHTW RQAPSLPVEL FRVSVSVLDQ KIYVAGLHQE
201: DGSDSLKNSV TVLDTETQVS DRVAIPCSVS QGKEIFISTS VGGKVNLVTG RKVVDYNPVE GSWEEVGDTM CEFMFSKCFC VVGNVLYSCA IDRVFRWYDT
301: EVRTWRNLEC LIGGRLPKLS PRAFVSLADY GGKLAVFWNQ GVGDWQMLWC AVIALERRNT CEILGNVEWS DHVLHVPKIR SYYNALSATL
101: KPDRTTTSSN KEEDRSSGYV LARIPIPHSP LTQRYSLAAV GSNIYNIGVT RYHHLTSSSV WVLDCRSHTW RQAPSLPVEL FRVSVSVLDQ KIYVAGLHQE
201: DGSDSLKNSV TVLDTETQVS DRVAIPCSVS QGKEIFISTS VGGKVNLVTG RKVVDYNPVE GSWEEVGDTM CEFMFSKCFC VVGNVLYSCA IDRVFRWYDT
301: EVRTWRNLEC LIGGRLPKLS PRAFVSLADY GGKLAVFWNQ GVGDWQMLWC AVIALERRNT CEILGNVEWS DHVLHVPKIR SYYNALSATL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.