Factsheet for Bra001343.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00653	Canola	cytosol	76.69	61.63
Bra011856.1-P	Field mustard	nucleus	31.95	44.5
Bra040994.1-P	Field mustard	cytosol	14.66	43.33
Bra023735.1-P	Field mustard	nucleus	53.01	37.7
Bra036150.1-P	Field mustard	plastid	51.5	36.93
AT5G38680.1	Thale cress	cytosol	48.12	35.85
Bra033628.1-P	Field mustard	nucleus	52.26	35.55
Bra011854.1-P	Field mustard	plastid	51.5	35.22
AT4G25710.1	Thale cress	cytosol	51.5	35.13
Bra022509.1-P	Field mustard	cytosol	42.11	33.04
Bra018362.1-P	Field mustard	cytosol	46.62	32.89
Bra000083.1-P	Field mustard	extracellular	42.86	32.39
Bra029716.1-P	Field mustard	mitochondrion	42.48	32.01
Bra030332.1-P	Field mustard	cytosol	46.24	31.46
Bra029718.1-P	Field mustard	nucleus	46.62	31.23
Bra032688.1-P	Field mustard	cytosol	40.98	30.88
Bra040886.1-P	Field mustard	cytosol	42.11	28.79
Bra017635.1-P	Field mustard	plasma membrane	38.72	27.47
Bra011852.1-P	Field mustard	cytosol	36.84	27.45
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	28.2	27.27
Bra011851.1-P	Field mustard	cytosol, plastid	40.98	26.27
Bra011300.1-P	Field mustard	cytosol	37.22	25.92
Bra011853.1-P	Field mustard	cytosol	38.72	25.06
Bra011855.1-P	Field mustard	plastid	22.18	23.69
Bra006063.1-P	Field mustard	cytosol	15.79	22.7
Bra017634.1-P	Field mustard	extracellular	17.67	22.17
Bra002939.1-P	Field mustard	cytosol	12.03	16.75

Protein Annotations

EnsemblPlants:Bra001343.1	EnsemblPlants:Bra001343.1-P	EnsemblPlantsGene:Bra001343	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	SEG:seg	SMART:SM00256	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI000254061D	UniProt:M4CAW4	MapMan:35.1	:	:

Description

AT4G39550 (E=2e-040) | kelch repeat-containing F-box family protein

Coordinates

chrA03:+:15934775..15935924

Molecular Weight (calculated)

29641.5 Da

IEP (calculated)

8.617

GRAVY (calculated)

-0.149

Length

266 amino acids

Sequence
(BLAST)

001: MSSPEKRTSK KKKKEPSPNP SLPDDFLLSC FARISTLYYP SLSLVSKSFR SLLTSPELYK VRSLSDHTEC CLYVCIQFFS DLGPTWYTLC RKPDQTKSSS
101: SSSEYVLAKV PILNSPRASF TGLVSVGPNI YNINSGPVSI LNCRSHTWSE GPSMRDDLYS LSASVVDEKI YVIGRWRELE GLVGLPELTS ESSVRLADHG
201: GKMAVLVSQN LSFYSRFSHK KVIWCGEISL ERRNGGCEIW GKVEWFDHVL TVPAGCHVVK VLGVTV

Best Arabidopsis Sequence Match ( AT4G25710.2 )
(BLAST)

001: MERLVSGETT TSSNMKKKKK KVSSTTNPSL PDDLVLVIIA RVSILYYPIL SLVSKSFRSL LASPELYKVR SLLGRRESRL YVCINMYSYK NGPSWFTLCR
101: KPDRTTTSSN KEEDRSSGYV LARIPIPHSP LTQRYSLAAV GSNIYNIGVT RYHHLTSSSV WVLDCRSHTW RQAPSLPVEL FRVSVSVLDQ KIYVAGLHQE
201: DGSDSLKNSV TVLDTETQVS DRVAIPCSVS QGKEIFISTS VGGKVNLVTG RKVVDYNPVE GSWEEVGDTM YGMTLR

Arabidopsis Description

F-box/kelch-repeat protein At4g25710 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.