Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001343.1-P | Field mustard | nucleus | 61.63 | 76.69 |
| CDY68916 | Canola | nucleus | 43.5 | 47.06 |
| CDY09006 | Canola | nucleus | 42.9 | 46.56 |
| AT5G38680.1 | Thale cress | cytosol | 48.94 | 45.38 |
| CDY41983 | Canola | cytosol | 33.53 | 43.53 |
| CDY12136 | Canola | cytosol | 10.88 | 43.37 |
| CDX86750 | Canola | cytosol | 14.2 | 41.59 |
| CDY53173 | Canola | nucleus, plastid | 45.02 | 40.16 |
| AT4G25710.1 | Thale cress | cytosol | 47.13 | 40.0 |
| CDY41985 | Canola | plastid | 32.02 | 39.85 |
| CDY42633 | Canola | plastid | 32.93 | 39.64 |
| CDX78384 | Canola | cytosol | 16.92 | 38.89 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 12.08 | 37.74 |
| CDY16283 | Canola | cytosol | 16.62 | 37.67 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 38.37 | 37.57 |
| CDX91543 | Canola | plastid | 38.07 | 36.73 |
| CDY07711 | Canola | extracellular | 38.67 | 36.36 |
| CDY57171 | Canola | cytosol | 35.95 | 36.28 |
| CDY42631 | Canola | nucleus | 31.12 | 35.89 |
| CDY29974 | Canola | plasma membrane | 35.35 | 35.45 |
| CDY63148 | Canola | cytosol | 35.35 | 35.35 |
| CDY53174 | Canola | cytosol | 34.14 | 34.98 |
| CDX72687 | Canola | cytosol | 35.35 | 34.93 |
| CDY02008 | Canola | cytosol | 38.67 | 34.69 |
| CDY35547 | Canola | cytosol | 26.28 | 34.52 |
| CDY36006 | Canola | cytosol | 22.96 | 34.39 |
| CDY27975 | Canola | nucleus, plastid | 33.53 | 33.43 |
| CDX99633 | Canola | mitochondrion | 39.58 | 33.42 |
| CDY15927 | Canola | cytosol | 39.27 | 33.33 |
| CDY51548 | Canola | plastid | 34.14 | 33.33 |
| CDY01110 | Canola | cytosol | 35.05 | 32.86 |
| CDX75197 | Canola | cytosol | 36.56 | 32.7 |
| CDY41984 | Canola | cytosol | 37.46 | 32.38 |
| CDY42632 | Canola | cytosol | 36.56 | 31.59 |
| CDX72460 | Canola | extracellular | 37.76 | 31.57 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 32.63 | 31.49 |
| CDY19889 | Canola | cytosol | 31.72 | 30.0 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 33.23 | 29.81 |
| CDY62432 | Canola | golgi | 38.97 | 29.52 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 36.86 | 29.26 |
| CDY41986 | Canola | cytosol | 35.05 | 28.16 |
| CDY51549 | Canola | plastid | 15.11 | 27.62 |
| CDY66883 | Canola | extracellular | 17.52 | 27.62 |
| CDY13275 | Canola | mitochondrion | 16.92 | 26.92 |
| CDX98384 | Canola | plastid | 22.96 | 24.05 |
| CDY44215 | Canola | plasma membrane | 20.54 | 23.78 |
| CDX81183 | Canola | cytosol | 16.01 | 22.36 |
| CDY13276 | Canola | cytosol | 20.54 | 18.58 |
| CDY49285 | Canola | golgi, plasma membrane | 31.72 | 17.95 |
| CDY41987 | Canola | plastid | 35.05 | 16.22 |
| CDY42635 | Canola | nucleus | 35.95 | 15.91 |
Protein Annotations
| EnsemblPlants:CDY00653 | EnsemblPlantsGene:GSBRNA2T00110481001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | PFAM:PF00646 | ProteinID:CDY00653 | ProteinID:CDY00653.1 | SEG:seg | SMART:SM00256 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EE5934 | MapMan:35.1 | : | : |
Description
BnaC03g36370D
Coordinates
chrLK031921:+:42750..49095
Molecular Weight (calculated)
37684.2 Da
IEP (calculated)
8.450
GRAVY (calculated)
-0.242
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPEKRTSK KKKEPSPNPS LPDDFLLSCF ARISTLYYPS LSLVSKSFRS LLTSPELYKV RSLADHTECC LYVCIQFFSD LGPTWYTLCR KPDQTLINKT
101: KSSSSSGYVL AKVPIPNSPR ASFTGLVSVG PNIYNINSGP VSILNCRSHT WSEAPSMHDD LYSLSASVLD EKIYVIETQT WDPVTIGLKD GFYNESIDGK
201: FLVVASNKEV VIYDLKKVRW EVVRTRSRMD CNMDLSAYCE IDNVLYSAWG GEFKWYDAKG YIGRWRKLEG LPKPVFYYRF SHEKMIWCGE ISLERRNGGC
301: EIWGKVEWFD HHRLLTVPAG CHVVKVLGVT V
101: KSSSSSGYVL AKVPIPNSPR ASFTGLVSVG PNIYNINSGP VSILNCRSHT WSEAPSMHDD LYSLSASVLD EKIYVIETQT WDPVTIGLKD GFYNESIDGK
201: FLVVASNKEV VIYDLKKVRW EVVRTRSRMD CNMDLSAYCE IDNVLYSAWG GEFKWYDAKG YIGRWRKLEG LPKPVFYYRF SHEKMIWCGE ISLERRNGGC
301: EIWGKVEWFD HHRLLTVPAG CHVVKVLGVT V
001: MSSPEKFSPA PESNSNPSLP DALIISCIAR VSRLYYPILS FVSKSFRSLL ASPELYKERS LLNRTEGCLY VCLYLNPFES PSWFTLCLKP DQALSSETSN
101: KKKSSGYVLA TVSIPHPRLV QRSSLVAVGS NIYNIGRSIS PYSSVSIFDC RSHTWREAPS LPVELVEVSA GVLDGKIYVA GSCKDGDSLN LKNTFEVFDT
201: KTQVWDHVPI PYNETKHNIY SKSLCIDEKW YVGAKRKVVS YNPKKGIWDL VESEMCSYKS SYDYCEIENV LYSVEKTWRG TVFRWYDTEL GRWRKLEGLN
301: MPYSGTGDRG GKKMIWCAVI TLERRKNSGI WGNVEWFAHV LTVPKTFVFQ KFLAATV
101: KKKSSGYVLA TVSIPHPRLV QRSSLVAVGS NIYNIGRSIS PYSSVSIFDC RSHTWREAPS LPVELVEVSA GVLDGKIYVA GSCKDGDSLN LKNTFEVFDT
201: KTQVWDHVPI PYNETKHNIY SKSLCIDEKW YVGAKRKVVS YNPKKGIWDL VESEMCSYKS SYDYCEIENV LYSVEKTWRG TVFRWYDTEL GRWRKLEGLN
301: MPYSGTGDRG GKKMIWCAVI TLERRKNSGI WGNVEWFAHV LTVPKTFVFQ KFLAATV
Arabidopsis Description
Putative F-box/kelch-repeat protein At5g38680 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFV4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.