Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84184 | Canola | cytosol, nucleus, vacuole | 50.6 | 39.62 |
| CDX86750 | Canola | cytosol | 49.4 | 36.28 |
| CDY41983 | Canola | cytosol | 48.19 | 15.69 |
| CDY35547 | Canola | cytosol | 44.58 | 14.68 |
| CDY41985 | Canola | plastid | 44.58 | 13.91 |
| CDY42633 | Canola | plastid | 44.58 | 13.45 |
| CDX75197 | Canola | cytosol | 55.42 | 12.43 |
| CDY68916 | Canola | nucleus | 44.58 | 12.09 |
| CDY53174 | Canola | cytosol | 46.99 | 12.07 |
| CDY09006 | Canola | nucleus | 43.37 | 11.8 |
| CDY57171 | Canola | cytosol | 45.78 | 11.59 |
| CDY51548 | Canola | plastid | 45.78 | 11.21 |
| CDY19889 | Canola | cytosol | 46.99 | 11.14 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 45.78 | 11.08 |
| CDY00653 | Canola | cytosol | 43.37 | 10.88 |
| CDY63148 | Canola | cytosol | 43.37 | 10.88 |
| CDY42632 | Canola | cytosol | 49.4 | 10.71 |
| CDY02008 | Canola | cytosol | 46.99 | 10.57 |
| CDY15927 | Canola | cytosol | 49.4 | 10.51 |
| CDX72687 | Canola | cytosol | 42.17 | 10.45 |
| CDY41984 | Canola | cytosol | 48.19 | 10.44 |
| CDY53173 | Canola | nucleus, plastid | 45.78 | 10.24 |
| CDX99633 | Canola | mitochondrion | 48.19 | 10.2 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 40.96 | 10.06 |
| CDY29974 | Canola | plasma membrane | 39.76 | 10.0 |
| CDY01110 | Canola | cytosol | 42.17 | 9.92 |
| CDX91543 | Canola | plastid | 39.76 | 9.62 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 42.17 | 9.49 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 46.99 | 9.35 |
| CDX72460 | Canola | extracellular | 43.37 | 9.09 |
| CDY41986 | Canola | cytosol | 44.58 | 8.98 |
| CDY62432 | Canola | golgi | 38.55 | 7.32 |
| CDY07711 | Canola | extracellular | 30.12 | 7.1 |
| CDY27975 | Canola | nucleus, plastid | 25.3 | 6.33 |
| CDY41987 | Canola | plastid | 46.99 | 5.45 |
| CDY42635 | Canola | nucleus | 44.58 | 4.95 |
| CDY49285 | Canola | golgi, plasma membrane | 33.73 | 4.79 |
| CDY13276 | Canola | cytosol | 9.64 | 2.19 |
| CDY66883 | Canola | extracellular | 4.82 | 1.9 |
| CDY44215 | Canola | plasma membrane | 6.02 | 1.75 |
| CDY51549 | Canola | plastid | 3.61 | 1.66 |
| CDX81183 | Canola | cytosol | 3.61 | 1.27 |
| CDY36006 | Canola | cytosol | 2.41 | 0.9 |
| CDY42631 | Canola | nucleus | 2.41 | 0.7 |
| CDX98384 | Canola | plastid | 1.2 | 0.32 |
| CDY13275 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY16283 | Canola | cytosol | 0.0 | 0.0 |
| CDX78384 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY12136 | EnsemblPlantsGene:GSBRNA2T00061129001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFscan:PS50181 |
| ProteinID:CDY12136 | ProteinID:CDY12136.1 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EAC7E1 | UniProt:A0A078FFX7 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g60520DBnaC03g60520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFX7]
Coordinates
chrLK032017:-:768429..768680
Molecular Weight (calculated)
9651.1 Da
IEP (calculated)
9.409
GRAVY (calculated)
0.020
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MAIPTSTSMN EDEPPFKKRR LTFIRRQMTI LMLPDDLILN CLARISRLDY PTLSLVSKRF RSLLTLVELY QTRTLLGCTE SCL
001: MRKKKKKIVL SSTSEAEKVS IPYLPDDLLL NCLARISRLY YPTLSLVSKR FRSLLASTEL YETRRLLGTS ESCLYFFMTE RRNDHEVYGK VEWCHVVHTL
101: PLFNLSRALS CYHCLSHCFL MIIYIILFSI
101: PLFNLSRALS CYHCLSHCFL MIIYIILFSI
Arabidopsis Description
Putative F-box protein At1g77880 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.