Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002939.1-P | Field mustard | cytosol | 32.0 | 58.64 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 14.57 | 48.11 |
| CDY12136 | Canola | cytosol | 11.14 | 46.99 |
| AT1G77880.1 | Thale cress | cytosol | 16.86 | 45.38 |
| CDY44215 | Canola | plasma membrane | 35.71 | 43.71 |
| CDX86750 | Canola | cytosol | 13.71 | 42.48 |
| CDY35547 | Canola | cytosol | 27.14 | 37.7 |
| CDY41983 | Canola | cytosol | 27.43 | 37.65 |
| CDY13275 | Canola | mitochondrion | 21.14 | 35.58 |
| CDY68916 | Canola | nucleus | 30.57 | 34.97 |
| CDY41985 | Canola | plastid | 26.0 | 34.21 |
| CDY09006 | Canola | nucleus | 29.71 | 34.1 |
| CDX75197 | Canola | cytosol | 36.0 | 34.05 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 33.14 | 33.82 |
| CDX72687 | Canola | cytosol | 32.0 | 33.43 |
| CDY53173 | Canola | nucleus, plastid | 35.43 | 33.42 |
| CDY63148 | Canola | cytosol | 31.14 | 32.93 |
| CDX72460 | Canola | extracellular | 36.86 | 32.58 |
| CDY41984 | Canola | cytosol | 35.14 | 32.11 |
| CDY42633 | Canola | plastid | 25.14 | 32.0 |
| CDY00653 | Canola | cytosol | 30.0 | 31.72 |
| CDX98384 | Canola | plastid | 28.57 | 31.65 |
| CDY42632 | Canola | cytosol | 34.57 | 31.59 |
| CDY53174 | Canola | cytosol | 29.14 | 31.58 |
| CDY01110 | Canola | cytosol | 31.71 | 31.44 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 30.0 | 31.07 |
| CDY02008 | Canola | cytosol | 32.57 | 30.89 |
| CDY57171 | Canola | cytosol | 28.86 | 30.79 |
| CDX78384 | Canola | cytosol | 12.57 | 30.56 |
| CDX91543 | Canola | plastid | 29.71 | 30.32 |
| CDX99633 | Canola | mitochondrion | 33.71 | 30.1 |
| CDY15927 | Canola | cytosol | 33.43 | 30.0 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 31.43 | 29.81 |
| CDY16283 | Canola | cytosol | 12.29 | 29.45 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 33.43 | 28.06 |
| CDY51548 | Canola | plastid | 27.14 | 28.02 |
| CDY41986 | Canola | cytosol | 32.86 | 27.91 |
| CDY42631 | Canola | nucleus | 22.29 | 27.18 |
| CDY07711 | Canola | extracellular | 27.14 | 26.99 |
| CDY29974 | Canola | plasma membrane | 24.86 | 26.36 |
| CDY51549 | Canola | plastid | 12.29 | 23.76 |
| CDY27975 | Canola | nucleus, plastid | 22.0 | 23.19 |
| CDY62432 | Canola | golgi | 28.86 | 23.11 |
| CDY66883 | Canola | extracellular | 13.71 | 22.86 |
| CDY13276 | Canola | cytosol | 23.71 | 22.68 |
| CDY36006 | Canola | cytosol | 13.71 | 21.72 |
| CDY49285 | Canola | golgi, plasma membrane | 32.0 | 19.15 |
| CDY41987 | Canola | plastid | 30.29 | 14.83 |
| CDX81183 | Canola | cytosol | 10.0 | 14.77 |
| CDY42635 | Canola | nucleus | 30.0 | 14.04 |
Protein Annotations
| EnsemblPlants:CDY19889 | EnsemblPlantsGene:GSBRNA2T00009669001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFAM:PF01344 | PFscan:PS50181 | ProteinID:CDY19889 | ProteinID:CDY19889.1 |
| SMART:SM00256 | SUPFAM:SSF117281 | UniParc:UPI0004EB5585 | UniProt:A0A078G389 | MapMan:35.1 | : |
Description
BnaC09g31550DBnaC09g31550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G389]
Coordinates
chrLK032101:+:258920..260057
Molecular Weight (calculated)
40705.5 Da
IEP (calculated)
9.160
GRAVY (calculated)
-0.277
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKKSSSHNE QKRVVTTVLT MPYLPDELLL NCLARISRLY YPTLSLISKR FHSLLASTEL YRTRRLLGST ENCIYACLLS PHNQPHWCTL GRQPTLIAPF
101: WNPFRILRNR TRMSSSGNLL VSVPSHNFFP DQCPWISTIV GSDIYIMIGG YNNLEPSSSV FVVDYRVHTW HEAPSMLVAK KHPLKSKDRD FSNFIEFFDP
201: ETNIWEHVPS PCAKIHERHI DHCCSFRGNL CLLFRDKAVV YNPKENKWDV VAKELKMLLS GGSFRMLNWY DCVERSWGDL KGMKKLPELP KAYRGSLRLE
301: NCGGKIVLLW EENVRSICSM KEKMIWCAEV ALERLNSREI YGKVKWCHVN
101: WNPFRILRNR TRMSSSGNLL VSVPSHNFFP DQCPWISTIV GSDIYIMIGG YNNLEPSSSV FVVDYRVHTW HEAPSMLVAK KHPLKSKDRD FSNFIEFFDP
201: ETNIWEHVPS PCAKIHERHI DHCCSFRGNL CLLFRDKAVV YNPKENKWDV VAKELKMLLS GGSFRMLNWY DCVERSWGDL KGMKKLPELP KAYRGSLRLE
301: NCGGKIVLLW EENVRSICSM KEKMIWCAEV ALERLNSREI YGKVKWCHVN
001: MMNGIKSSPC NMPYLPDDLL LNILGRVSRL YYPILSLVSK RFRSLVGSLE LYKIRTLLGR RTENCLYLSL RFSYGSNPRW FTLCRRPTRT PSPEPNLKSR
101: WFTSCFRPIL TNLTRATSKE EKKLSENLMV SIPTSNDCPL SGLTCNTIGS YIYMIGGYIN GVLSSRVFFL DCRSHTWHEA PSMQVARKSP LVNVLDGKIY
201: VVEGWRGSDY SNLIEIFDPK TQKWEHVPSP SAEMRGRYIS KGLVYEEKLY LFGDKNVVYK PKESRWDALG FDMNLWLVSY GSSCVIDNVC YMVFYKRLIW
301: YDSEVRYWRV LKGLEKLPKL RHRRSCIRMV DYGGKIAILW EKKVRVVGSD KKMIWCTEIA LERRSAHKIY GKIEWCDVVL TVPKSCSLLE FIAVTI
101: WFTSCFRPIL TNLTRATSKE EKKLSENLMV SIPTSNDCPL SGLTCNTIGS YIYMIGGYIN GVLSSRVFFL DCRSHTWHEA PSMQVARKSP LVNVLDGKIY
201: VVEGWRGSDY SNLIEIFDPK TQKWEHVPSP SAEMRGRYIS KGLVYEEKLY LFGDKNVVYK PKESRWDALG FDMNLWLVSY GSSCVIDNVC YMVFYKRLIW
301: YDSEVRYWRV LKGLEKLPKL RHRRSCIRMV DYGGKIAILW EKKVRVVGSD KKMIWCTEIA LERRSAHKIY GKIEWCDVVL TVPKSCSLLE FIAVTI
Arabidopsis Description
Putative F-box/kelch-repeat protein At4g11770 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0E4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.