CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011853.1-P	Field mustard	cytosol	96.6	96.84
CDY42634	Canola	cytosol, nucleus, plastid	92.48	91.37
CDY41984	Canola	cytosol	59.22	63.71
CDY42632	Canola	cytosol	58.98	63.45
CDX86750	Canola	cytosol	13.59	49.56
AT4G39590.1	Thale cress	plastid	45.15	46.27
CDY12136	Canola	cytosol	8.98	44.58
CDX84184	Canola	cytosol, nucleus, vacuole	11.41	44.34
CDY41985	Canola	plastid	28.4	43.98
CDY53174	Canola	cytosol	34.47	43.96
CDY63148	Canola	cytosol	34.47	42.9
CDY42633	Canola	plastid	28.4	42.55
CDX72687	Canola	cytosol	34.47	42.39
CDY01110	Canola	cytosol	35.19	41.08
CDY41983	Canola	cytosol	25.0	40.39
CDX78384	Canola	cytosol	14.08	40.28
CDY09006	Canola	nucleus	28.64	38.69
CDY68916	Canola	nucleus	28.64	38.56
CDY13275	Canola	mitochondrion	19.42	38.46
CDY16283	Canola	cytosol	13.59	38.36
CDY16374	Canola	cytosol, nucleus, peroxisome	31.07	37.87
CDY53173	Canola	nucleus, plastid	33.74	37.47
CDX75197	Canola	cytosol	33.25	37.03
CDX91543	Canola	plastid	30.58	36.73
CDX99633	Canola	mitochondrion	34.95	36.73
CDY15927	Canola	cytosol	34.71	36.67
CDY51548	Canola	plastid	30.1	36.58
CDY42631	Canola	nucleus	25.0	35.89
CDY00653	Canola	cytosol	28.16	35.05
CDY35547	Canola	cytosol	21.36	34.92
CDY02008	Canola	cytosol	31.07	34.69
CDY57171	Canola	cytosol	27.43	34.45
CDY29938	Canola	cytosol, peroxisome, plasma membrane	28.16	33.82
CDY49284	Canola	extracellular, plasma membrane, vacuole	30.1	33.6
CDX72460	Canola	extracellular	32.28	33.59
CDY19889	Canola	cytosol	27.91	32.86
CDY29974	Canola	plasma membrane	26.21	32.73
CDX98384	Canola	plastid	25.0	32.59
CDY07711	Canola	extracellular	26.94	31.53
CDY36006	Canola	cytosol	16.02	29.86
CDY27975	Canola	nucleus, plastid	24.03	29.82
CDY66883	Canola	extracellular	14.81	29.05
CDY51549	Canola	plastid	12.62	28.73
CDY44215	Canola	plasma membrane	19.42	27.97
CDY62432	Canola	golgi	29.37	27.69
CDY13276	Canola	cytosol	21.36	24.04
CDY49285	Canola	golgi, plasma membrane	29.37	20.68
CDY41987	Canola	plastid	34.47	19.86
CDX81183	Canola	cytosol	11.41	19.83
CDY42635	Canola	nucleus	33.5	18.45

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078HW59	EnsemblPlants:CDY41986	ProteinID:CDY41986	ProteinID:CDY41986.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00073982001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0004EEB410	SEG:seg	:	:	:

Description

BnaA01g05580DBnaA01g05580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW59]

Coordinates

chrLK032511:-:189655..190893

Molecular Weight (calculated)

46607.7 Da

IEP (calculated)

5.204

GRAVY (calculated)

-0.289

Length

412 amino acids

Sequence
(BLAST)

001: MSTRSSAVAN GDQPPRKKMT KQSPEISIWS LPYDLILNII ARVSRMYYPT LSLVSKKLGS VVSSPELYQT RSRLNRTESC LYLCLRYYRD HPLDPNPHWF
101: ALCMKPNRTL TDRLFIPVTS PDVRHERSTG LTSKDVSIVA AGSNIYKTGG YTPSSSEVLV LDCRFNTWHS APVMREKRSS PAASLVEGKI YVAGGCEDVN
201: SENWVEVFDP KTQTWGNVTN PGAEIRPSSG AELESFGIEG KLYLFGHNRK CVVYDPKEAR WNPMIELGMG MDMDVVMGMG MDMYEAMDME MDMNGVASAV
301: SYFHCVIGDV LFLWNEREFR WYDFNASSWK KLNGVEDLPD FDGDCKMVDV GGKMAVLWKV FGRGEERSIW CAEIALERRG DEMWGKVEWF DVVLTTHEQC
401: GLFDADILSA TV

Best Arabidopsis Sequence Match ( AT4G39590.1 )
(BLAST)

001: MFPMSSTSRS SAANNRKDPP RKKNKETPSP VTREPTSIDS LPNDLLLNCF ARVSRMYYPA LSRVSKRFRS IVTSPEIYNT RSLLNRTEKC LYLCLRFPFD
101: NNTHWFTLYQ NPNRTVSDKV FLQIPSPQYP LTLSSNLVAV GSNIYRIGGT VGDDSCPLGF DREPSSKVSI LDCRSHTWRD GPRMRLNRRS STTSVVDGKI
201: YVTGGTEDTD NPSHWIEVFD PKTQSWGTVT NPHIVKVWEE VCYRRAVKSI GHDGKLYLSG DKYVVYDPDE GKWNSVEEHW LIGYAIGSSN CVVDNILFYW
301: DQGVFKWYDS KVSSWKQLKG LEGLPDDFSQ REYCKLVDLG GKMAVLWDKW EYSGVCMIFC AEISLEKRDG DEIWGKVEWF DTVLEVGASC SLKSADALSA
401: SV

Arabidopsis Description

F-box/kelch-repeat protein At4g39590 [Source:UniProtKB/Swiss-Prot;Acc:Q1PE10]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.