Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57171 | Canola | cytosol | 83.2 | 93.6 |
| CDY51548 | Canola | plastid | 57.99 | 63.13 |
| CDY51549 | Canola | plastid | 27.37 | 55.8 |
| CDY66883 | Canola | extracellular | 27.64 | 48.57 |
| AT4G39600.2 | Thale cress | plastid | 48.24 | 47.09 |
| CDY12136 | Canola | cytosol | 10.57 | 46.99 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 46.88 | 46.51 |
| AT5G48980.1 | Thale cress | nucleus | 50.14 | 46.37 |
| CDX86750 | Canola | cytosol | 14.09 | 46.02 |
| CDY15927 | Canola | cytosol | 47.97 | 45.38 |
| CDX99633 | Canola | mitochondrion | 47.7 | 44.9 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 12.47 | 43.4 |
| CDY41983 | Canola | cytosol | 29.54 | 42.75 |
| CDY53174 | Canola | cytosol | 35.23 | 40.25 |
| CDY41985 | Canola | plastid | 28.73 | 39.85 |
| CDY42633 | Canola | plastid | 29.27 | 39.27 |
| CDY00653 | Canola | cytosol | 34.69 | 38.67 |
| CDY63148 | Canola | cytosol | 34.42 | 38.37 |
| CDY01110 | Canola | cytosol | 36.59 | 38.24 |
| AT2G20380.1 | Thale cress | cytosol | 36.04 | 38.22 |
| CDY09006 | Canola | nucleus | 31.17 | 37.7 |
| CDX78384 | Canola | cytosol | 14.63 | 37.5 |
| CDY68916 | Canola | nucleus | 30.89 | 37.25 |
| CDY53173 | Canola | nucleus, plastid | 36.31 | 36.12 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 33.06 | 36.09 |
| CDX72687 | Canola | cytosol | 32.52 | 35.82 |
| CDX72460 | Canola | extracellular | 37.94 | 35.35 |
| CDX91543 | Canola | plastid | 32.79 | 35.28 |
| CDX75197 | Canola | cytosol | 34.15 | 34.05 |
| CDY41984 | Canola | cytosol | 34.96 | 33.68 |
| CDY42632 | Canola | cytosol | 34.15 | 32.9 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 32.79 | 32.79 |
| CDY19889 | Canola | cytosol | 30.89 | 32.57 |
| CDY35547 | Canola | cytosol | 22.22 | 32.54 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 29.81 | 32.07 |
| CDY41986 | Canola | cytosol | 34.69 | 31.07 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 34.96 | 30.94 |
| CDY16283 | Canola | cytosol | 12.2 | 30.82 |
| CDY29974 | Canola | plasma membrane | 27.1 | 30.3 |
| CDY42631 | Canola | nucleus | 23.31 | 29.97 |
| CDY07711 | Canola | extracellular | 27.91 | 29.26 |
| CDX98384 | Canola | plastid | 24.66 | 28.8 |
| CDY13275 | Canola | mitochondrion | 15.45 | 27.4 |
| CDY44215 | Canola | plasma membrane | 21.14 | 27.27 |
| CDY36006 | Canola | cytosol | 15.72 | 26.24 |
| CDY27975 | Canola | nucleus, plastid | 22.76 | 25.3 |
| CDY62432 | Canola | golgi | 29.27 | 24.71 |
| CDX81183 | Canola | cytosol | 13.01 | 20.25 |
| CDY49285 | Canola | golgi, plasma membrane | 31.98 | 20.17 |
| CDY13276 | Canola | cytosol | 19.78 | 19.95 |
| CDY41987 | Canola | plastid | 29.0 | 14.96 |
| CDY42635 | Canola | nucleus | 29.27 | 14.44 |
Protein Annotations
| EnsemblPlants:CDY02008 | EnsemblPlantsGene:GSBRNA2T00113333001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_2 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF07646 | ProteinID:CDY02008 | ProteinID:CDY02008.1 | SEG:seg |
| SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EDB972 | MapMan:35.1 | : |
Description
BnaC04g14930D
Coordinates
chrLK031931:-:276816..277961
Molecular Weight (calculated)
41754.2 Da
IEP (calculated)
9.296
GRAVY (calculated)
-0.290
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLTAIGSGE EPPSKKLAIE PTTNLPLPDE LVLGCFARAS RLHYPILSLV SKTFRSLTSS PELYQTRSLL NCTENCLYVC LQFPNDPRLR WFTLCRKPDK
101: ALKIKKKKKK KKKESSTSGN VLGQVRILAV GHKLYAVRDG PCSSDVFFLD CRTHTWVETP SLRLAHTFSE CDGMMYLPGG SESPDSLNFV QVFDVKTQTW
201: NPVPPEKKIF RLRDLQGRAY ENNDVAAASS RRWLVVARLK DCTTSVEGSG TLCLIEKAFY RYASSSGELL WSNRSTESDV WRKVQGLEGL PKFTRYCNVY
301: LVESGGKLVV FWDKYVPARG GYKEKMIWCA EISLDTRSSE EVWGKVEWFD AVLTVPKSYK FVYSIAATL
101: ALKIKKKKKK KKKESSTSGN VLGQVRILAV GHKLYAVRDG PCSSDVFFLD CRTHTWVETP SLRLAHTFSE CDGMMYLPGG SESPDSLNFV QVFDVKTQTW
201: NPVPPEKKIF RLRDLQGRAY ENNDVAAASS RRWLVVARLK DCTTSVEGSG TLCLIEKAFY RYASSSGELL WSNRSTESDV WRKVQGLEGL PKFTRYCNVY
301: LVESGGKLVV FWDKYVPARG GYKEKMIWCA EISLDTRSSE EVWGKVEWFD AVLTVPKSYK FVYSIAATL
001: MADSQRLSTA SGVKDGQPPW KKKKLSNDTT SNPSLPYDVI LIILARVSRS YYTNLSLVSK SFRSILTSPE LYKTRTLLGK TENFLYVCLR FPDEANPRWF
101: TLYRKPNQTL TDHTTKKKKK KKKKEEKSSV NLLAPISILN SHPVEWSAII SVDHYLYAIS ADIEKAPYSN VPYLDCRTHT WNEAPRMRLA HTNSEFEGIV
201: YLPGSFESPD SLNCVEVYNT MTQTWKPVPP EKRMFKLENL EKKIYYKSFH LDSRAGKGLS LSYKSKHLTC GLVVLDTVDS YLRSSCMIEN IAYFYRKGNF
301: IWRGLDGKIL VYGKIEGLEG LPKFSRYSSV QLAEYGGKLV VLWDKYVPAS GYKEKMIWCA EISLEKRNGK EIWGNVEWFD AVLTVPKSYK ILCATAATL
101: TLYRKPNQTL TDHTTKKKKK KKKKEEKSSV NLLAPISILN SHPVEWSAII SVDHYLYAIS ADIEKAPYSN VPYLDCRTHT WNEAPRMRLA HTNSEFEGIV
201: YLPGSFESPD SLNCVEVYNT MTQTWKPVPP EKRMFKLENL EKKIYYKSFH LDSRAGKGLS LSYKSKHLTC GLVVLDTVDS YLRSSCMIEN IAYFYRKGNF
301: IWRGLDGKIL VYGKIEGLEG LPKFSRYSSV QLAEYGGKLV VLWDKYVPAS GYKEKMIWCA EISLEKRNGK EIWGNVEWFD AVLTVPKSYK ILCATAATL
Arabidopsis Description
F-box/kelch-repeat protein At5g48980 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.