Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41983 | Canola | cytosol | 37.28 | 41.96 |
| CDY42633 | Canola | plastid | 39.37 | 41.09 |
| CDY41985 | Canola | plastid | 36.93 | 39.85 |
| CDY53173 | Canola | nucleus, plastid | 50.52 | 39.08 |
| AT4G39550.1 | Thale cress | nucleus | 49.13 | 35.97 |
| CDY13275 | Canola | mitochondrion | 24.39 | 33.65 |
| CDY16283 | Canola | cytosol | 17.07 | 33.56 |
| CDY53174 | Canola | cytosol | 36.24 | 32.2 |
| CDY36006 | Canola | cytosol | 24.74 | 32.13 |
| CDX78384 | Canola | cytosol | 16.03 | 31.94 |
| CDX72687 | Canola | cytosol | 37.28 | 31.94 |
| CDY63148 | Canola | cytosol | 36.59 | 31.72 |
| CDY00653 | Canola | cytosol | 35.89 | 31.12 |
| CDY09006 | Canola | nucleus | 32.06 | 30.16 |
| CDX98384 | Canola | plastid | 33.1 | 30.06 |
| CDX91543 | Canola | plastid | 35.89 | 30.03 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 35.19 | 29.88 |
| CDY01110 | Canola | cytosol | 36.59 | 29.75 |
| CDY68916 | Canola | nucleus | 31.01 | 29.09 |
| CDY51549 | Canola | plastid | 17.77 | 28.18 |
| CDX75197 | Canola | cytosol | 35.19 | 27.3 |
| CDY41984 | Canola | cytosol | 36.24 | 27.15 |
| CDY42632 | Canola | cytosol | 35.54 | 26.63 |
| CDY07711 | Canola | extracellular | 32.4 | 26.42 |
| CDX72460 | Canola | extracellular | 35.54 | 25.76 |
| CDY29974 | Canola | plasma membrane | 29.62 | 25.76 |
| CDY44215 | Canola | plasma membrane | 25.44 | 25.52 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 36.93 | 25.42 |
| CDY27975 | Canola | nucleus, plastid | 28.92 | 25.0 |
| CDY41986 | Canola | cytosol | 35.89 | 25.0 |
| CDX99633 | Canola | mitochondrion | 33.45 | 24.49 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 31.01 | 24.12 |
| CDY15927 | Canola | cytosol | 32.75 | 24.1 |
| CDY02008 | Canola | cytosol | 29.97 | 23.31 |
| CDY35547 | Canola | cytosol | 20.21 | 23.02 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 26.83 | 22.45 |
| CDY19889 | Canola | cytosol | 27.18 | 22.29 |
| CDY66883 | Canola | extracellular | 16.03 | 21.9 |
| CDY13276 | Canola | cytosol | 27.87 | 21.86 |
| CDY57171 | Canola | cytosol | 24.74 | 21.65 |
| CDY51548 | Canola | plastid | 25.44 | 21.53 |
| CDY62432 | Canola | golgi | 32.4 | 21.28 |
| CDX81183 | Canola | cytosol | 13.24 | 16.03 |
| CDY49285 | Canola | golgi, plasma membrane | 32.06 | 15.73 |
| CDX86750 | Canola | cytosol | 5.57 | 14.16 |
| CDY41987 | Canola | plastid | 30.66 | 12.31 |
| CDY42635 | Canola | nucleus | 30.31 | 11.63 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 3.48 | 9.43 |
| CDY12136 | Canola | cytosol | 0.7 | 2.41 |
Protein Annotations
| EnsemblPlants:CDY42631 | EnsemblPlantsGene:GSBRNA2T00075138001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF01344 |
| ProteinID:CDY42631 | ProteinID:CDY42631.1 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0004EF21DC |
| UniProt:A0A078HY61 | MapMan:35.1 | : | : | : | : |
Description
BnaC01g00430DBnaC01g00430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY61]
Coordinates
chrLK032530:-:162158..163318
Molecular Weight (calculated)
32233.4 Da
IEP (calculated)
9.642
GRAVY (calculated)
-0.472
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPERKRKK TKKKPLLVLG PTPESTPITT KKASGYVLAK LSTPHSRHAH GCSVVTVGSD IYNIGGPIDK ANEPSSSVSI LDCRSNTWRE GPSMLVKRNY
101: PFASVLDGKI YAAGSSDSSS SEWMEVFDTK TQTWELVSSP VAAEMRARRH LHIKRMAGID GKVHILGSSS RLAYDTREGR WESVGKEMSS GWGWYSYCVV
201: DNVIYYYKER GEIKWYDSKG RRWRALKGMA VLWDRDVAST GDKMIWCTVI ALERHNDEEI WGKVEWSDTV LKVPESCIIK HALAATL
101: PFASVLDGKI YAAGSSDSSS SEWMEVFDTK TQTWELVSSP VAAEMRARRH LHIKRMAGID GKVHILGSSS RLAYDTREGR WESVGKEMSS GWGWYSYCVV
201: DNVIYYYKER GEIKWYDSKG RRWRALKGMA VLWDRDVAST GDKMIWCTVI ALERHNDEEI WGKVEWSDTV LKVPESCIIK HALAATL
001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV
Arabidopsis Description
F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.