CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41984	Canola	cytosol	90.34	90.34
CDY42634	Canola	cytosol, nucleus, plastid	64.23	58.99
CDY41986	Canola	cytosol	63.45	58.98
CDY12136	Canola	cytosol	10.71	49.4
CDX84184	Canola	cytosol, nucleus, vacuole	13.05	47.17
CDX86750	Canola	cytosol	13.84	46.9
AT4G39590.1	Thale cress	plastid	47.52	45.27
CDX72687	Canola	cytosol	39.16	44.78
CDY41985	Canola	plastid	30.03	43.23
CDY63148	Canola	cytosol	37.34	43.2
CDY01110	Canola	cytosol	39.16	42.49
CDY53174	Canola	cytosol	35.51	42.11
CDY41983	Canola	cytosol	27.94	41.96
CDY42633	Canola	plastid	29.77	41.45
CDY68916	Canola	nucleus	31.33	39.22
CDX99633	Canola	mitochondrion	39.43	38.52
CDY15927	Canola	cytosol	39.16	38.46
CDX75197	Canola	cytosol	37.08	38.38
CDY53173	Canola	nucleus, plastid	37.08	38.27
CDX91543	Canola	plastid	33.94	37.9
CDY09006	Canola	nucleus	30.03	37.7
CDY16374	Canola	cytosol, nucleus, peroxisome	32.9	37.28
CDY00653	Canola	cytosol	31.59	36.56
CDY35547	Canola	cytosol	24.02	36.51
CDY51548	Canola	plastid	31.59	35.69
CDY42631	Canola	nucleus	26.63	35.54
CDY29938	Canola	cytosol, peroxisome, plasma membrane	31.33	34.99
CDY19889	Canola	cytosol	31.59	34.57
CDY02008	Canola	cytosol	32.9	34.15
CDY57171	Canola	cytosol	28.98	33.84
CDY16283	Canola	cytosol	12.79	33.56
CDY29974	Canola	plasma membrane	28.72	33.33
CDX72460	Canola	extracellular	34.46	33.33
CDX78384	Canola	cytosol	12.53	33.33
CDY13275	Canola	mitochondrion	18.02	33.17
CDY49284	Canola	extracellular, plasma membrane, vacuole	31.85	33.06
CDX98384	Canola	plastid	27.15	32.91
CDY07711	Canola	extracellular	27.94	30.4
CDY66883	Canola	extracellular	15.93	29.05
CDY51549	Canola	plastid	13.58	28.73
CDY27975	Canola	nucleus, plastid	24.8	28.61
CDY36006	Canola	cytosol	15.93	27.6
CDY62432	Canola	golgi	31.33	27.46
CDY44215	Canola	plasma membrane	20.37	27.27
CDY13276	Canola	cytosol	22.19	23.22
CDY41987	Canola	plastid	38.9	20.84
CDY49285	Canola	golgi, plasma membrane	30.81	20.17
CDY42635	Canola	nucleus	39.16	20.05
CDX81183	Canola	cytosol	10.44	16.88

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078HXQ4	EnsemblPlants:CDY42632	ProteinID:CDY42632	ProteinID:CDY42632.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00075139001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0004EE15AF	:	:	:	:

Description

BnaC01g00440DBnaC01g00440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXQ4]

Coordinates

chrLK032530:-:163928..165214

Molecular Weight (calculated)

43686.4 Da

IEP (calculated)

8.296

GRAVY (calculated)

-0.312

Length

383 amino acids

Sequence
(BLAST)

001: MSSTTRSSTA MNGDEPPRKM MTKQSPEISI LSLPHDLLLN CLARVSRLYY PTLSLVSQKF RSVVASPDLY ETRSLLHRTE SCLYMCLRYN RDYPRNLDTY
101: WFALCRKPNR TVTDRSSGRL FIPVSSPQLR PARSMSLVAV GSNIYRIGGD MPSSSRVSVL DCRFNTWHRA PRMRLKRSSP AASLIDGKIF VAGGCEDPSS
201: VNWIEVFDPK TRTWGNVTNP GTETRPRAEV RSFGIGGKLY IRGDEDVVYD PKEASWNPIG LGMDMAFAAS FNHCVIGDVM FLWDDDREFR WYDSKASSWK
301: KLNGVEDLPN FYGYCKMVDH GGKKMALLWE GYLRSEYVVW CAEIALEMRD GDEMWGIVEW LDVVLSLKEP FRMFDANVLS AMV

Best Arabidopsis Sequence Match ( AT4G39590.1 )
(BLAST)

001: MFPMSSTSRS SAANNRKDPP RKKNKETPSP VTREPTSIDS LPNDLLLNCF ARVSRMYYPA LSRVSKRFRS IVTSPEIYNT RSLLNRTEKC LYLCLRFPFD
101: NNTHWFTLYQ NPNRTVSDKV FLQIPSPQYP LTLSSNLVAV GSNIYRIGGT VGDDSCPLGF DREPSSKVSI LDCRSHTWRD GPRMRLNRRS STTSVVDGKI
201: YVTGGTEDTD NPSHWIEVFD PKTQSWGTVT NPHIVKVWEE VCYRRAVKSI GHDGKLYLSG DKYVVYDPDE GKWNSVEEHW LIGYAIGSSN CVVDNILFYW
301: DQGVFKWYDS KVSSWKQLKG LEGLPDDFSQ REYCKLVDLG GKMAVLWDKW EYSGVCMIFC AEISLEKRDG DEIWGKVEWF DTVLEVGASC SLKSADALSA
401: SV

Arabidopsis Description

F-box/kelch-repeat protein At4g39590 [Source:UniProtKB/Swiss-Prot;Acc:Q1PE10]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.