CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011852.1-P	Field mustard	cytosol	33.15	66.39
CDY42635	Canola	nucleus	62.94	60.16
CDX84184	Canola	cytosol, nucleus, vacuole	6.99	47.17
CDY12136	Canola	cytosol	5.45	46.99
CDX86750	Canola	cytosol	6.99	44.25
CDY41983	Canola	cytosol	15.66	43.92
AT1G61540.1	Thale cress	cytosol	23.92	42.54
CDY41985	Canola	plastid	15.52	41.73
CDY42633	Canola	plastid	15.24	39.64
CDY42632	Canola	cytosol	20.84	38.9
CDY41984	Canola	cytosol	20.56	38.38
CDY09006	Canola	nucleus	15.24	35.74
CDY53173	Canola	nucleus, plastid	18.46	35.58
CDY68916	Canola	nucleus	15.1	35.29
CDY42634	Canola	cytosol, nucleus, plastid	20.56	35.25
CDX75197	Canola	cytosol	18.18	35.14
CDY00653	Canola	cytosol	16.22	35.05
CDY01110	Canola	cytosol	17.2	34.84
CDY63148	Canola	cytosol	16.08	34.74
CDY15927	Canola	cytosol	18.88	34.62
CDY41986	Canola	cytosol	19.86	34.47
CDX99633	Canola	mitochondrion	18.6	33.93
CDX91543	Canola	plastid	15.94	33.24
CDX78384	Canola	cytosol	6.57	32.64
CDY51548	Canola	plastid	15.38	32.45
CDY16374	Canola	cytosol, nucleus, peroxisome	15.24	32.25
CDY29938	Canola	cytosol, peroxisome, plasma membrane	15.38	32.07
CDX72687	Canola	cytosol	14.96	31.94
CDY07711	Canola	extracellular	15.38	31.25
CDY49284	Canola	extracellular, plasma membrane, vacuole	16.08	31.17
CDY42631	Canola	nucleus	12.31	30.66
CDX72460	Canola	extracellular	16.78	30.3
CDY19889	Canola	cytosol	14.83	30.29
CDY16283	Canola	cytosol	6.15	30.14
CDY53174	Canola	cytosol	13.57	30.03
CDY35547	Canola	cytosol	10.35	29.37
CDY29974	Canola	plasma membrane	13.43	29.09
CDY02008	Canola	cytosol	14.96	29.0
CDY57171	Canola	cytosol	13.29	28.96
CDY13275	Canola	mitochondrion	8.11	27.88
CDY62432	Canola	golgi	16.92	27.69
CDX98384	Canola	plastid	12.03	27.22
CDY27975	Canola	nucleus, plastid	12.31	26.51
CDY51549	Canola	plastid	6.43	25.41
CDY44215	Canola	plasma membrane	10.07	25.17
CDY36006	Canola	cytosol	7.69	24.89
CDY66883	Canola	extracellular	7.13	24.29
CDY49285	Canola	golgi, plasma membrane	15.24	18.63
CDY13276	Canola	cytosol	9.09	17.76
CDX81183	Canola	cytosol	5.87	17.72

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078HVX5	EnsemblPlants:CDY41987	ProteinID:CDY41987	ProteinID:CDY41987.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00073984001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0004EF12D6	SEG:seg	:	:	:

Description

BnaA01g05590DBnaA01g05590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVX5]

Coordinates

chrLK032511:-:192369..195763

Molecular Weight (calculated)

82155.8 Da

IEP (calculated)

8.831

GRAVY (calculated)

-0.431

Length

715 amino acids

Sequence
(BLAST)

001: MSSKSNSRSS AATSGKDPPR DKKMKKSSLA TEPTSISILS LPDDLLINCL ARVSRLYYHF LSRVSKRFRS IIASPELYAT RSRLNRTEKC IYLYLRFPFD
101: PKTYWLTLSG LPSRNVANGS SGYYMEQIPC PNYLRPAQSS TLVSVGSDIY KIGGANHLHE CKIWKRNYCV SVSVLDCRTH TWRQAPSMGM ARNANATATK
201: PNWIEAFDLE TQTWGPVTNP RIFRLYEEDR VKGFEAKSVS LEGKLYIFGD EAAIGFLWDQ YLYTATNQEC RVWCAGIALE RRDGDEMWGK VECTDAQAVR
301: DWLSTEPCTF FLVVIYTLNA FIIIFHLNRP RPKKSYVTNV KQTFNSEPLF TYKDITHELR NPRKSSAATS RKDPPHDKKM PETEPMSISF SSLPDDLLIN
401: CLARVSRLYY PALSCVSKNF RSIIASPEIY QTRASLNRTE KCVYLYLSFC RDPETYWFTM RRRPSRNIAN ESSGYYMEMA PSPKYLHPAQ SSTLVAVGSD
501: VYKIGGGDHS TCKLSKRKCS YSFSVLDCRT HMWRQAPSMW VERDSSSTAT FFDGKIYVAG GCDKRYVGYP DRVEAFDLEK QTWGFVTNPR VFDWYHKYKA
601: ARECHCVIDD VLFFWESGAF KWYDSKTRLC KEVSDVKGLP DLHDPKFCKM AMVDLGGKMG LLWNTKTSQE CKIWCAEITF ERRHGDEMWG KVEWFDYVLS
701: THESCSSFYA VSASV

Best Arabidopsis Sequence Match ( AT1G61540.1 )
(BLAST)

001: MNGEKPLRER KKKMPYPSPV TEEPISIMSL PYDLLLNCFS LVSRLYYPTL SLVSKTFRSI ITSRELYEIR SRLNRTDKCL YLCFPYDMNT HWFTLCREPN
101: RNVAENSSGY LLVQVPSPNG LLPVHSSSVI AVGSNIYKIG GTKSYRHKLW KRTRYSSSVS VLDCRSHRWR QAPGMRVARG CSSTVCEVDG KIYIAGGCKE
201: DIGSLYWIEV FDPKTQTWGT LKNPCIEYQH DIGYRCEVKS LGLDGKIYMF GSEFVVYNFE EDRWKCIGRD KYNLYHAVDP MSRINSSSCV VDNVLFILDK
301: GTRVFKWYDF KVSLWKELNG VEGLPDLSDR GYVKMVDLGG KIAVLWQECL TNKKIKRIWC AEISLERRDR DEIWGKVEWF DIVLSVHSSF SLLCADTISV
401: VV

Arabidopsis Description

Putative F-box/kelch-repeat protein At1g61540 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.