Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011300.1-P | Field mustard | cytosol | 93.24 | 90.31 |
| CDY12136 | Canola | cytosol | 12.43 | 55.42 |
| AT3G43710.1 | Thale cress | cytosol | 55.95 | 54.76 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 14.59 | 50.94 |
| CDX86750 | Canola | cytosol | 14.32 | 46.9 |
| CDY63148 | Canola | cytosol | 35.95 | 40.18 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 40.0 | 40.11 |
| CDY41985 | Canola | plastid | 28.65 | 39.85 |
| CDX72460 | Canola | extracellular | 42.16 | 39.39 |
| CDY35547 | Canola | cytosol | 26.76 | 39.29 |
| CDY41983 | Canola | cytosol | 26.76 | 38.82 |
| CDX72687 | Canola | cytosol | 35.14 | 38.81 |
| CDY42633 | Canola | plastid | 28.65 | 38.55 |
| CDY01110 | Canola | cytosol | 36.22 | 37.96 |
| CDY41984 | Canola | cytosol | 39.19 | 37.86 |
| CDY53173 | Canola | nucleus, plastid | 37.84 | 37.74 |
| CDY53174 | Canola | cytosol | 32.43 | 37.15 |
| CDY42632 | Canola | cytosol | 38.38 | 37.08 |
| CDY00653 | Canola | cytosol | 32.7 | 36.56 |
| CDY09006 | Canola | nucleus | 30.0 | 36.39 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 33.24 | 36.39 |
| CDY68916 | Canola | nucleus | 30.0 | 36.27 |
| CDY19889 | Canola | cytosol | 34.05 | 36.0 |
| CDY57171 | Canola | cytosol | 31.62 | 35.67 |
| CDX91543 | Canola | plastid | 32.97 | 35.57 |
| CDY42631 | Canola | nucleus | 27.3 | 35.19 |
| CDY15927 | Canola | cytosol | 36.76 | 34.87 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 32.16 | 34.69 |
| CDX99633 | Canola | mitochondrion | 36.49 | 34.44 |
| CDY02008 | Canola | cytosol | 34.05 | 34.15 |
| CDY51548 | Canola | plastid | 30.81 | 33.63 |
| CDY41986 | Canola | cytosol | 37.03 | 33.25 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 37.03 | 32.85 |
| CDY13275 | Canola | mitochondrion | 18.38 | 32.69 |
| CDY16283 | Canola | cytosol | 12.7 | 32.19 |
| CDX78384 | Canola | cytosol | 12.43 | 31.94 |
| CDX98384 | Canola | plastid | 26.49 | 31.01 |
| CDY29974 | Canola | plasma membrane | 27.03 | 30.3 |
| CDY07711 | Canola | extracellular | 27.84 | 29.26 |
| CDY36006 | Canola | cytosol | 16.76 | 28.05 |
| CDY44215 | Canola | plasma membrane | 21.08 | 27.27 |
| CDY66883 | Canola | extracellular | 15.14 | 26.67 |
| CDY51549 | Canola | plastid | 12.97 | 26.52 |
| CDY27975 | Canola | nucleus, plastid | 23.78 | 26.51 |
| CDY62432 | Canola | golgi | 30.27 | 25.63 |
| CDY49285 | Canola | golgi, plasma membrane | 37.57 | 23.76 |
| CDY13276 | Canola | cytosol | 20.0 | 20.22 |
| CDY41987 | Canola | plastid | 35.14 | 18.18 |
| CDX81183 | Canola | cytosol | 11.35 | 17.72 |
| CDY42635 | Canola | nucleus | 35.14 | 17.38 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EnsemblPlants:CDX75197 | ProteinID:CDX75197 | ProteinID:CDX75197.1 | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00121043001 | InterPro:IPR001810 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PFscan:PS50181 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0004EE3A84 | SEG:seg |
Description
BnaA01g05050D
Coordinates
chrLK031804:-:45578..46690
Molecular Weight (calculated)
42516.5 Da
IEP (calculated)
9.179
GRAVY (calculated)
-0.202
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKLIGEEPP VKRRRMTFNI LMLPDDLLLN CLARISRLHY PVISLVSKRL RSILTSSELY QTRTLLGRTE SCLYVGLSVH HDSKPLRWFT LCRRPNSSRK
101: VLVPVSSPHH SFPEFWPAVA LVGTNVYVIG GLINKIASSS VMVMDCRSHT WSEAPSMLVP RQSPFVCVLD GKIYVVGSQK DKTTWMEVFD TKTGNWEFVP
201: GPSEEICKRA TRYRCIGYGG KVYVTAEKGD TYELNRGRWR RGPLFIDRAG FSSSFCVIDN VLYRCNSCMI DWYDSEENLW ETVKGLKGLV PFYSGYIHAK
301: AANHGGKMVI LWEEKVYVNK LPHETKIWCA EITIERRQKE MWGTPDWFEV VLSTKNERFD QLSYVFSATL
101: VLVPVSSPHH SFPEFWPAVA LVGTNVYVIG GLINKIASSS VMVMDCRSHT WSEAPSMLVP RQSPFVCVLD GKIYVVGSQK DKTTWMEVFD TKTGNWEFVP
201: GPSEEICKRA TRYRCIGYGG KVYVTAEKGD TYELNRGRWR RGPLFIDRAG FSSSFCVIDN VLYRCNSCMI DWYDSEENLW ETVKGLKGLV PFYSGYIHAK
301: AANHGGKMVI LWEEKVYVNK LPHETKIWCA EITIERRQKE MWGTPDWFEV VLSTKNERFD QLSYVFSATL
001: METTPKRSKT LLMSNGEERR SMTFGIEMLP DDLVLSCLAR VPRMYYPILS LVSKRFRSFL TSTELYQTRN LLGSTESFLF VCLRIVNDSN PLRLFTLCRR
101: PNSLTKVMVP ILSPDSIPKF LPDVVLVGSN IYVIGGLINN NASHKVMVMD CRSHTWREAQ GTCVARVSPS ACVLDGKIYV AGGCKNLDAT MWMEVFDTKT
201: ESWEFVSSPG EEICRDLTSC ESIGYDGNVY VESMKTYGLY ELHKGRWREG QYSMSRGGSL SSQCVIDNVL YRSWSYMVEW YDSENKLWNS LKGLEKLFIV
301: TNQYVPTKCV NYGGKLAVFW LEKVYAKHLH QETKIWCAVI TIERRKKEEI WGTREWFDLV FTTNEEMVDL THVFAATL
101: PNSLTKVMVP ILSPDSIPKF LPDVVLVGSN IYVIGGLINN NASHKVMVMD CRSHTWREAQ GTCVARVSPS ACVLDGKIYV AGGCKNLDAT MWMEVFDTKT
201: ESWEFVSSPG EEICRDLTSC ESIGYDGNVY VESMKTYGLY ELHKGRWREG QYSMSRGGSL SSQCVIDNVL YRSWSYMVEW YDSENKLWNS LKGLEKLFIV
301: TNQYVPTKCV NYGGKLAVFW LEKVYAKHLH QETKIWCAVI TIERRKKEEI WGTREWFDLV FTTNEEMVDL THVFAATL
Arabidopsis Description
Putative F-box/kelch-repeat protein At3g43710 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2B5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.