Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78384 | Canola | cytosol | 73.97 | 75.0 |
| Bra006063.1-P | Field mustard | cytosol | 80.82 | 63.78 |
| CDX81183 | Canola | cytosol | 58.9 | 36.29 |
| CDY36006 | Canola | cytosol | 45.89 | 30.32 |
| AT2G03460.1 | Thale cress | plastid | 47.95 | 27.24 |
| CDY13275 | Canola | mitochondrion | 35.62 | 25.0 |
| CDY29974 | Canola | plasma membrane | 43.15 | 19.09 |
| AT3G08810.1 | Thale cress | nucleus | 44.52 | 18.95 |
| CDY41985 | Canola | plastid | 33.56 | 18.42 |
| CDY51549 | Canola | plastid | 22.6 | 18.23 |
| CDY42633 | Canola | plastid | 34.25 | 18.18 |
| CDY27975 | Canola | nucleus, plastid | 41.1 | 18.07 |
| AT5G51250.1 | Thale cress | cytosol | 43.84 | 17.39 |
| CDY42631 | Canola | nucleus | 33.56 | 17.07 |
| CDY09006 | Canola | nucleus | 35.62 | 17.05 |
| CDY07711 | Canola | extracellular | 40.41 | 16.76 |
| CDY53174 | Canola | cytosol | 36.99 | 16.72 |
| CDX91543 | Canola | plastid | 39.04 | 16.62 |
| CDY00653 | Canola | cytosol | 37.67 | 16.62 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 38.36 | 16.57 |
| CDY68916 | Canola | nucleus | 34.25 | 16.34 |
| CDY53173 | Canola | nucleus, plastid | 40.41 | 15.9 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 40.41 | 15.13 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 35.62 | 14.09 |
| CDY51548 | Canola | plastid | 32.19 | 13.86 |
| CDY62432 | Canola | golgi | 41.1 | 13.73 |
| CDY41986 | Canola | cytosol | 38.36 | 13.59 |
| CDY15927 | Canola | cytosol | 36.3 | 13.59 |
| CDY41984 | Canola | cytosol | 35.62 | 13.58 |
| CDX99633 | Canola | mitochondrion | 36.3 | 13.52 |
| CDY57171 | Canola | cytosol | 30.14 | 13.41 |
| CDX72460 | Canola | extracellular | 36.3 | 13.38 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 37.67 | 13.19 |
| CDX98384 | Canola | plastid | 28.08 | 12.97 |
| CDY66883 | Canola | extracellular | 18.49 | 12.86 |
| CDY42632 | Canola | cytosol | 33.56 | 12.79 |
| CDX75197 | Canola | cytosol | 32.19 | 12.7 |
| CDY41983 | Canola | cytosol | 21.92 | 12.55 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 29.45 | 12.54 |
| CDY19889 | Canola | cytosol | 29.45 | 12.29 |
| CDY02008 | Canola | cytosol | 30.82 | 12.2 |
| CDX72687 | Canola | cytosol | 27.4 | 11.94 |
| CDY01110 | Canola | cytosol | 28.77 | 11.9 |
| CDY44215 | Canola | plasma membrane | 22.6 | 11.54 |
| CDY63148 | Canola | cytosol | 26.03 | 11.48 |
| CDY13276 | Canola | cytosol | 23.97 | 9.56 |
| CDY49285 | Canola | golgi, plasma membrane | 36.99 | 9.23 |
| CDX86750 | Canola | cytosol | 5.48 | 7.08 |
| CDY41987 | Canola | plastid | 30.14 | 6.15 |
| CDY42635 | Canola | nucleus | 30.14 | 5.88 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 4.11 | 5.66 |
| CDY35547 | Canola | cytosol | 6.85 | 3.97 |
| CDY12136 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY16283 | EnsemblPlantsGene:GSBRNA2T00090779001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | ProteinID:CDY16283 | ProteinID:CDY16283.1 | SUPFAM:SSF117281 |
| UniParc:UPI0004EE6D17 | UniProt:A0A078FV51 | MapMan:35.1 | : | : | : |
Description
BnaC01g23180DBnaC01g23180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FV51]
Coordinates
chrLK032062:+:390085..391232
Molecular Weight (calculated)
17078.6 Da
IEP (calculated)
5.948
GRAVY (calculated)
-0.292
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNSFEVFDT QTRFHVVTNE GVLAYDPKQG KWDMVVGGMC GLMCSDDYCV IGNVLYSVYE GVFKWYDTER KTWRDLQGLV GLPNITRRRE FIRLGDYGGK
101: MVIWCAEISL ERRPDTSEIW GKVEWFDQLR KININFQVEK VLSTTL
101: MVIWCAEISL ERRPDTSEIW GKVEWFDQLR KININFQVEK VLSTTL
001: MSSLPDDLLL SIFARISRLY YPTLSLVSKS FRSLLASPDL YKARSLLGHT ESCLYVCFHF DSGPNTHWFT LCRKPDGTLT NDTSKKKKSN GYVLATVPIP
101: HSPPANFSSL VAVGSDIYNI GGSIYLGPSS SSVSILDSQS HMWREAPSLR VELMSHSASV LDRKIYVAGS YKDGNGDSNS CKNLFEVFDT KTQVWHPEPI
201: PCSKTKGIFY SKSACIDGKF HVETTHGVVY AYKEGRWDKA IPTMFGMRAS YSFCEINNVL FYIHRGVFRW YDTKLRMWRI LKGLLGLPSL PENMFVRLAD
301: YGGKMAVLWE EDRPSCGAGG RDEMMIWCAV IALKRHLNFS FWGKVEWFDH VLTVPKQHVF VKALTASL
101: HSPPANFSSL VAVGSDIYNI GGSIYLGPSS SSVSILDSQS HMWREAPSLR VELMSHSASV LDRKIYVAGS YKDGNGDSNS CKNLFEVFDT KTQVWHPEPI
201: PCSKTKGIFY SKSACIDGKF HVETTHGVVY AYKEGRWDKA IPTMFGMRAS YSFCEINNVL FYIHRGVFRW YDTKLRMWRI LKGLLGLPSL PENMFVRLAD
301: YGGKMAVLWE EDRPSCGAGG RDEMMIWCAV IALKRHLNFS FWGKVEWFDH VLTVPKQHVF VKALTASL
Arabidopsis Description
F-box/kelch-repeat protein At5g51250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU49]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.