Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018362.1-P | Field mustard | cytosol | 97.87 | 85.15 |
| CDY02008 | Canola | cytosol | 93.6 | 83.2 |
| CDY51548 | Canola | plastid | 64.63 | 62.54 |
| CDY51549 | Canola | plastid | 30.49 | 55.25 |
| CDX86750 | Canola | cytosol | 16.16 | 46.9 |
| CDY12136 | Canola | cytosol | 11.59 | 45.78 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 14.33 | 44.34 |
| CDY66883 | Canola | extracellular | 28.05 | 43.81 |
| AT4G39600.2 | Thale cress | plastid | 47.56 | 41.27 |
| CDY41983 | Canola | cytosol | 31.4 | 40.39 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 45.43 | 40.05 |
| AT5G48980.1 | Thale cress | nucleus | 48.17 | 39.6 |
| CDY15927 | Canola | cytosol | 46.34 | 38.97 |
| CDX99633 | Canola | mitochondrion | 46.34 | 38.78 |
| CDY41985 | Canola | plastid | 30.18 | 37.22 |
| CDY53174 | Canola | cytosol | 36.59 | 37.15 |
| AT2G20380.1 | Thale cress | cytosol | 39.33 | 37.07 |
| CDX78384 | Canola | cytosol | 16.16 | 36.81 |
| CDY42633 | Canola | plastid | 30.49 | 36.36 |
| CDY00653 | Canola | cytosol | 36.28 | 35.95 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 36.59 | 35.5 |
| CDY63148 | Canola | cytosol | 35.67 | 35.35 |
| CDY01110 | Canola | cytosol | 37.8 | 35.13 |
| CDX91543 | Canola | plastid | 35.98 | 34.4 |
| CDY09006 | Canola | nucleus | 31.1 | 33.44 |
| CDY68916 | Canola | nucleus | 31.1 | 33.33 |
| CDY53173 | Canola | nucleus, plastid | 37.5 | 33.15 |
| CDX72687 | Canola | cytosol | 32.32 | 31.64 |
| CDX75197 | Canola | cytosol | 35.67 | 31.62 |
| CDX72460 | Canola | extracellular | 37.5 | 31.06 |
| CDY16283 | Canola | cytosol | 13.41 | 30.14 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 30.79 | 29.45 |
| CDY41984 | Canola | cytosol | 34.15 | 29.24 |
| CDY29974 | Canola | plasma membrane | 29.27 | 29.09 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 32.62 | 29.0 |
| CDY42632 | Canola | cytosol | 33.84 | 28.98 |
| CDY19889 | Canola | cytosol | 30.79 | 28.86 |
| CDY13275 | Canola | mitochondrion | 17.99 | 28.37 |
| CDY07711 | Canola | extracellular | 29.57 | 27.56 |
| CDY41986 | Canola | cytosol | 34.45 | 27.43 |
| CDY35547 | Canola | cytosol | 21.04 | 27.38 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 34.15 | 26.86 |
| CDY36006 | Canola | cytosol | 17.38 | 25.79 |
| CDY42631 | Canola | nucleus | 21.65 | 24.74 |
| CDY27975 | Canola | nucleus, plastid | 25.0 | 24.7 |
| CDX98384 | Canola | plastid | 23.17 | 24.05 |
| CDY62432 | Canola | golgi | 31.1 | 23.34 |
| CDY44215 | Canola | plasma membrane | 20.12 | 23.08 |
| CDX81183 | Canola | cytosol | 14.33 | 19.83 |
| CDY49285 | Canola | golgi, plasma membrane | 31.71 | 17.78 |
| CDY13276 | Canola | cytosol | 18.29 | 16.39 |
| CDY41987 | Canola | plastid | 28.96 | 13.29 |
| CDY42635 | Canola | nucleus | 28.96 | 12.7 |
Protein Annotations
| EnsemblPlants:CDY57171 | EnsemblPlantsGene:GSBRNA2T00020606001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box_dom |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | ProteinID:CDY57171 |
| ProteinID:CDY57171.1 | SEG:seg | SMART:SM00256 | SUPFAM:SSF117281 | UniParc:UPI0004EF3CCC | UniProt:A0A078J1M9 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA05g35450DBnaA05g35450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1M9]
Coordinates
chrLK033551:+:26116..27249
Molecular Weight (calculated)
37014.6 Da
IEP (calculated)
10.039
GRAVY (calculated)
-0.300
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLTAIGSGE EPPSKKLAIE PTTNLPLPDE LVLGCFARAS RLHYPILSLV SKTFRSLTSS PELYQTRSLL NRTENCLYVC LQFPNDPCLR WFTLCRKPDK
101: ALNNKKKKKK SSTSGNVLGQ VRILAVGHKL YAVRDGPCSS DSPDSLNFVQ VFDVKTQTWK PVPPEKKIFR LRDLQGRAYQ NNDVAAASSR RWLVVARLKD
201: RTVSVEGSGT LCLIEKAFYR YASSSGELLW SNRSTESDVW RKVKGLEGLP KFTRYSNVYL VASGGKLVVF WDKYVPARGG YKEKMIWCAE ISLETRSSEE
301: VWGKVEWFDA VLTVPKSYKF VYSIAATL
101: ALNNKKKKKK SSTSGNVLGQ VRILAVGHKL YAVRDGPCSS DSPDSLNFVQ VFDVKTQTWK PVPPEKKIFR LRDLQGRAYQ NNDVAAASSR RWLVVARLKD
201: RTVSVEGSGT LCLIEKAFYR YASSSGELLW SNRSTESDVW RKVKGLEGLP KFTRYSNVYL VASGGKLVVF WDKYVPARGG YKEKMIWCAE ISLETRSSEE
301: VWGKVEWFDA VLTVPKSYKF VYSIAATL
001: MADSQRLSTA SGVKDGQPPW KKKKLSNDTT SNPSLPYDVI LIILARVSRS YYTNLSLVSK SFRSILTSPE LYKTRTLLGK TENFLYVCLR FPDEANPRWF
101: TLYRKPNQTL TDHTTKKKKK KKKKEEKSSV NLLAPISILN SHPVEWSAII SVDHYLYAIS ADIEKAPYSN VPYLDCRTHT WNEAPRMRLA HTNSEFEGIV
201: YLPGSFESPD SLNCVEVYNT MTQTWKPVPP EKRMFKLENL EKKIYYKSFH LDSRAGKGLS LSYKSKHLTC GLVVLDTVDS YLRSSCMIEN IAYFYRKGNF
301: IWRGLDGKIL VYGKIEGLEG LPKFSRYSSV QLAEYGGKLV VLWDKYVPAS GYKEKMIWCA EISLEKRNGK EIWGNVEWFD AVLTVPKSYK ILCATAATL
101: TLYRKPNQTL TDHTTKKKKK KKKKEEKSSV NLLAPISILN SHPVEWSAII SVDHYLYAIS ADIEKAPYSN VPYLDCRTHT WNEAPRMRLA HTNSEFEGIV
201: YLPGSFESPD SLNCVEVYNT MTQTWKPVPP EKRMFKLENL EKKIYYKSFH LDSRAGKGLS LSYKSKHLTC GLVVLDTVDS YLRSSCMIEN IAYFYRKGNF
301: IWRGLDGKIL VYGKIEGLEG LPKFSRYSSV QLAEYGGKLV VLWDKYVPAS GYKEKMIWCA EISLEKRNGK EIWGNVEWFD AVLTVPKSYK ILCATAATL
Arabidopsis Description
F-box/kelch-repeat protein At5g48980 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.