Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017635.1-P | Field mustard | plasma membrane | 86.99 | 85.6 |
| CDX72460 | Canola | extracellular | 70.19 | 65.4 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 13.55 | 47.17 |
| CDX86750 | Canola | cytosol | 13.01 | 42.48 |
| CDY12136 | Canola | cytosol | 9.49 | 42.17 |
| CDX75197 | Canola | cytosol | 40.11 | 40.0 |
| CDY49285 | Canola | golgi, plasma membrane | 63.41 | 40.0 |
| CDY63148 | Canola | cytosol | 34.42 | 38.37 |
| CDY41985 | Canola | plastid | 27.37 | 37.97 |
| CDY53174 | Canola | cytosol | 32.52 | 37.15 |
| CDY42633 | Canola | plastid | 27.64 | 37.09 |
| CDX72687 | Canola | cytosol | 33.6 | 37.01 |
| CDY01110 | Canola | cytosol | 35.23 | 36.83 |
| CDY68916 | Canola | nucleus | 30.35 | 36.6 |
| CDY09006 | Canola | nucleus | 30.08 | 36.39 |
| CDY16283 | Canola | cytosol | 14.09 | 35.62 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 32.52 | 35.5 |
| CDY41983 | Canola | cytosol | 24.12 | 34.9 |
| CDX91543 | Canola | plastid | 32.25 | 34.69 |
| CDY53173 | Canola | nucleus, plastid | 33.88 | 33.69 |
| CDX78384 | Canola | cytosol | 13.01 | 33.33 |
| CDY00653 | Canola | cytosol | 29.81 | 33.23 |
| CDY02008 | Canola | cytosol | 32.79 | 32.79 |
| CDY13275 | Canola | mitochondrion | 18.43 | 32.69 |
| CDY57171 | Canola | cytosol | 29.0 | 32.62 |
| CDY35547 | Canola | cytosol | 22.22 | 32.54 |
| CDY41984 | Canola | cytosol | 33.6 | 32.38 |
| CDY42632 | Canola | cytosol | 33.06 | 31.85 |
| CDY07711 | Canola | extracellular | 30.08 | 31.53 |
| CDY29974 | Canola | plasma membrane | 28.18 | 31.52 |
| CDY19889 | Canola | cytosol | 29.81 | 31.43 |
| CDY15927 | Canola | cytosol | 33.06 | 31.28 |
| CDY42631 | Canola | nucleus | 24.12 | 31.01 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 34.69 | 30.7 |
| CDY51548 | Canola | plastid | 28.18 | 30.68 |
| CDX99633 | Canola | mitochondrion | 32.52 | 30.61 |
| CDY41986 | Canola | cytosol | 33.6 | 30.1 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 27.64 | 29.74 |
| CDX98384 | Canola | plastid | 24.12 | 28.16 |
| CDY44215 | Canola | plasma membrane | 21.41 | 27.62 |
| CDY36006 | Canola | cytosol | 16.53 | 27.6 |
| CDY62432 | Canola | golgi | 30.35 | 25.63 |
| CDY27975 | Canola | nucleus, plastid | 23.04 | 25.6 |
| CDY66883 | Canola | extracellular | 14.36 | 25.24 |
| CDY51549 | Canola | plastid | 11.38 | 23.2 |
| CDY13276 | Canola | cytosol | 19.78 | 19.95 |
| CDX81183 | Canola | cytosol | 12.47 | 19.41 |
| CDY41987 | Canola | plastid | 31.17 | 16.08 |
| CDY42635 | Canola | nucleus | 31.71 | 15.64 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | UniProt:A0A078IIT2 | EnsemblPlants:CDY49284 | ProteinID:CDY49284 | ProteinID:CDY49284.1 |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00092699001 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0004EDFF0D | SEG:seg |
Description
BnaA03g50970DBnaA03g50970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIT2]
Coordinates
chrLK032822:+:85259..86399
Molecular Weight (calculated)
42199.4 Da
IEP (calculated)
7.140
GRAVY (calculated)
-0.210
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVEVPPVLM FLMLPNELIL SCLGRAPRLY YPTLTLVSKS FRSLINSPEL CKTRSLLACT ESCLYVWFQF QNDENTHLVH FIPEPLSNRG YKLVPIPSLD
101: SPPSAMSGVA AVGSDIYAIG GSIDGVSSSS IFVMDTHYHT WCKAPSMHVA RVSPSASVLD EKIYVTSGGG WGKLDYTNWM EVFDTKTQTW EFMPSPGSES
201: FDYENVALEG SIYVRSNEKG ETFKMNKGRW RAADLALTSG WTYNWKGLFC YCVIENVLYC YSSVDLYWYD FIDRQWREVK RLKGRLPMSS KNDHYRSADY
301: GGNLVFLWEE LVHTKNVQNR TLVWCAEISF KRRQRTEICG TVEWCDVVFT YTKQNTKQGD LMHVISTTA
101: SPPSAMSGVA AVGSDIYAIG GSIDGVSSSS IFVMDTHYHT WCKAPSMHVA RVSPSASVLD EKIYVTSGGG WGKLDYTNWM EVFDTKTQTW EFMPSPGSES
201: FDYENVALEG SIYVRSNEKG ETFKMNKGRW RAADLALTSG WTYNWKGLFC YCVIENVLYC YSSVDLYWYD FIDRQWREVK RLKGRLPMSS KNDHYRSADY
301: GGNLVFLWEE LVHTKNVQNR TLVWCAEISF KRRQRTEICG TVEWCDVVFT YTKQNTKQGD LMHVISTTA
001: MEYGEEPSIK RFLMLPDDLV FNCLARVSRL HYPTLSLVSK KFRFLLASKE LYQTRILLGG TESCLYVCVR LHTDSEQLHW FIIYQGPNSS KKVLVPISSP
101: NFTSAALPGF VVVGHEIYAI GGGSENKNAS INATGSKTYN ALSSVMVMDS RSHTWREAPS MRVARVFPSA CTLDGRIYVT GGCENLNSMN WMEIFDTKTQ
201: TWEFLQIPSE EVCKGSEYLS ISYQRTVYVG SREKDVTYKM HKGKWRGADI CLNHGWSLDP SSCCVIENVF YRCSLGDVRW YDLKKREWAA LKGLEGLPTF
301: TNYYRNFKSA DHCGKLAISW EEYVLVDDET KIWCAEIAIQ KRQNGEIWGT LEWFDNVFIS SGPNRHVDLL VNALTATVW
101: NFTSAALPGF VVVGHEIYAI GGGSENKNAS INATGSKTYN ALSSVMVMDS RSHTWREAPS MRVARVFPSA CTLDGRIYVT GGCENLNSMN WMEIFDTKTQ
201: TWEFLQIPSE EVCKGSEYLS ISYQRTVYVG SREKDVTYKM HKGKWRGADI CLNHGWSLDP SSCCVIENVF YRCSLGDVRW YDLKKREWAA LKGLEGLPTF
301: TNYYRNFKSA DHCGKLAISW EEYVLVDDET KIWCAEIAIQ KRQNGEIWGT LEWFDNVFIS SGPNRHVDLL VNALTATVW
Arabidopsis Description
F-box/kelch-repeat protein At4g33900 [Source:UniProtKB/Swiss-Prot;Acc:Q1PE27]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.