CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032688.1-P	Field mustard	cytosol	100.0	100.0
CDY63148	Canola	cytosol	88.67	94.56
CDY41983	Canola	cytosol	35.69	49.41
CDY41985	Canola	plastid	36.26	48.12
CDY42633	Canola	plastid	37.39	48.0
CDX84184	Canola	cytosol, nucleus, vacuole	14.16	47.17
CDX86750	Canola	cytosol	14.73	46.02
CDY68916	Canola	nucleus	38.53	44.44
CDY53174	Canola	cytosol	39.38	43.03
CDY09006	Canola	nucleus	37.11	42.95
CDY12136	Canola	cytosol	9.92	42.17
CDX72687	Canola	cytosol	39.94	42.09
CDY53173	Canola	nucleus, plastid	43.91	41.78
CDY42632	Canola	cytosol	42.49	39.16
CDY41984	Canola	cytosol	42.21	38.9
CDY57171	Canola	cytosol	35.13	37.8
CDX72460	Canola	extracellular	41.08	36.62
CDY42631	Canola	nucleus	29.75	36.59
CDY02008	Canola	cytosol	38.24	36.59
CDY42634	Canola	cytosol, nucleus, plastid	43.06	36.45
CDX99633	Canola	mitochondrion	40.23	36.22
CDX75197	Canola	cytosol	37.96	36.22
CDY15927	Canola	cytosol	39.94	36.15
CDY35547	Canola	cytosol	25.5	35.71
CDY49284	Canola	extracellular, plasma membrane, vacuole	36.83	35.23
CDY41986	Canola	cytosol	41.08	35.19
CDY00653	Canola	cytosol	32.86	35.05
CDY16374	Canola	cytosol, nucleus, peroxisome	33.43	34.91
CDY51548	Canola	plastid	33.14	34.51
CDX91543	Canola	plastid	33.43	34.4
CDY29938	Canola	cytosol, peroxisome, plasma membrane	33.43	34.4
CDY29974	Canola	plasma membrane	31.73	33.94
CDY07711	Canola	extracellular	33.14	33.24
CDY51549	Canola	plastid	16.71	32.6
CDY19889	Canola	cytosol	31.44	31.71
CDX78384	Canola	cytosol	12.75	31.25
CDX98384	Canola	plastid	27.2	30.38
CDY36006	Canola	cytosol	18.98	30.32
CDY13275	Canola	mitochondrion	17.56	29.81
CDY66883	Canola	extracellular	17.28	29.05
CDY27975	Canola	nucleus, plastid	27.2	28.92
CDY62432	Canola	golgi	35.69	28.83
CDY16283	Canola	cytosol	11.9	28.77
CDY44215	Canola	plasma membrane	20.96	25.87
CDY49285	Canola	golgi, plasma membrane	34.56	20.85
CDY13276	Canola	cytosol	20.68	19.95
CDX81183	Canola	cytosol	13.31	19.83
CDY41987	Canola	plastid	34.84	17.2
CDY42635	Canola	nucleus	33.43	15.78

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlants:CDY01110	ProteinID:CDY01110	ProteinID:CDY01110.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00111166001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002543FFE
SEG:seg	:	:	:	:	:

Description

BnaA04g07090D

Coordinates

chrLK031924:+:47598..48659

Molecular Weight (calculated)

39552.1 Da

IEP (calculated)

8.934

GRAVY (calculated)

-0.233

Length

353 amino acids

Sequence
(BLAST)

001: MSSHKKKRNK KLLNSSPLFP LSTANLSLPH DLLLNCIGRL SRLYYPTLSL VCKSYRSLIA SPDLYTTRSL LNRTESCLYV CLQRSPDSNP RWFTLSRRPN
101: RTLARNKKLS DYLLVPVTSP HVTSLRSSSV AVGSDIYEIG GLINGVPSSS VSVLDCRSNS WRQAPNMQVG RSFPSANVID GKILVKGGLE LKDVNSSKWV
201: EVFDPNTQNW TTVSFTCGSK EWQSEDDNGT TRRSSSFCLI DDVSYCFDNR KLKWFDEKVG DWRFVTGLES VPKCLLGFNT SCQVHLADYG GKMVVLWDRH
301: DRSSNCQGRT IWCAVIALER CSSEEISGTV EWSEAVLKVP NSFAFVHVLA AIV

Best Arabidopsis Sequence Match ( AT5G49000.2 )
(BLAST)

001: MSSPERKRKK RSLEPSPEST PNPSLPDDLI VSILARVSRL YYPILSLVSK SSRTLVTSPE LYKTRSFFNR TESCLYVCLD FPPDPNPRWF TLYRKPNQNI
101: TEKTKNSSGF VLAPIPNHHS HSSSIVAIGS NIYAIGGSIE NAPSSKVSIL DCRSHTWHEA PSMRMKRNYP AANVVDGKIY VAGGLEEFDS SKWMEVFDIK
201: TQTWEFVLSP LAERFIYRSL VIEGEIYIFG DKVVTYKPKE DRWGGVGEHQ SMDLGLFFHS YCVIDNVLYC YRPGGIKWYE SEKRSWRKLR GLKGLSKLAS
301: SCVKLADYGG KMALLWDKYI PCSGNKSHSI SCAVVSLERC KNQGIRGKVE WFDDMLTVPS SYNFVGALAA TL

Arabidopsis Description

F-box/kelch-repeat protein At5g49000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI70]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.