Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51549 | Canola | plastid | 32.86 | 38.12 |
| CDY57171 | Canola | cytosol | 43.81 | 28.05 |
| CDY02008 | Canola | cytosol | 48.57 | 27.64 |
| CDY51548 | Canola | plastid | 44.29 | 27.43 |
| CDX78384 | Canola | cytosol | 16.67 | 24.31 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 39.52 | 22.31 |
| AT5G48980.1 | Thale cress | nucleus | 40.95 | 21.55 |
| AT2G20380.1 | Thale cress | cytosol | 35.71 | 21.55 |
| CDY41983 | Canola | cytosol | 25.71 | 21.18 |
| AT4G39600.2 | Thale cress | plastid | 38.1 | 21.16 |
| CDY15927 | Canola | cytosol | 38.57 | 20.77 |
| CDX99633 | Canola | mitochondrion | 38.57 | 20.66 |
| CDY09006 | Canola | nucleus | 30.0 | 20.66 |
| CDY53174 | Canola | cytosol | 30.95 | 20.12 |
| CDY68916 | Canola | nucleus | 29.05 | 19.93 |
| CDY41985 | Canola | plastid | 25.24 | 19.92 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 30.95 | 19.23 |
| CDX72687 | Canola | cytosol | 30.0 | 18.81 |
| CDX91543 | Canola | plastid | 30.48 | 18.66 |
| CDY42633 | Canola | plastid | 24.29 | 18.55 |
| CDY16283 | Canola | cytosol | 12.86 | 18.49 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 29.52 | 18.08 |
| CDY00653 | Canola | cytosol | 27.62 | 17.52 |
| CDY01110 | Canola | cytosol | 29.05 | 17.28 |
| CDY36006 | Canola | cytosol | 17.62 | 16.74 |
| CDY63148 | Canola | cytosol | 25.71 | 16.31 |
| CDY07711 | Canola | extracellular | 27.14 | 16.19 |
| CDX98384 | Canola | plastid | 24.29 | 16.14 |
| CDY42631 | Canola | nucleus | 21.9 | 16.03 |
| CDY42632 | Canola | cytosol | 29.05 | 15.93 |
| CDX72460 | Canola | extracellular | 30.0 | 15.91 |
| CDY41984 | Canola | cytosol | 28.57 | 15.67 |
| CDY44215 | Canola | plasma membrane | 20.95 | 15.38 |
| CDY13275 | Canola | mitochondrion | 15.24 | 15.38 |
| CDX75197 | Canola | cytosol | 26.67 | 15.14 |
| CDY53173 | Canola | nucleus, plastid | 26.67 | 15.09 |
| CDY41986 | Canola | cytosol | 29.05 | 14.81 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 28.57 | 14.39 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 25.24 | 14.36 |
| CDX81183 | Canola | cytosol | 15.71 | 13.92 |
| CDY19889 | Canola | cytosol | 22.86 | 13.71 |
| CDY29974 | Canola | plasma membrane | 21.43 | 13.64 |
| CDY27975 | Canola | nucleus, plastid | 21.43 | 13.55 |
| CDY62432 | Canola | golgi | 27.62 | 13.27 |
| CDY35547 | Canola | cytosol | 12.38 | 10.32 |
| CDY49285 | Canola | golgi, plasma membrane | 27.62 | 9.91 |
| CDY13276 | Canola | cytosol | 16.67 | 9.56 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 4.76 | 9.43 |
| CDX86750 | Canola | cytosol | 4.29 | 7.96 |
| CDY41987 | Canola | plastid | 24.29 | 7.13 |
| CDY42635 | Canola | nucleus | 24.29 | 6.82 |
| CDY12136 | Canola | cytosol | 1.9 | 4.82 |
Protein Annotations
| EnsemblPlants:CDY66883 | EnsemblPlantsGene:GSBRNA2T00056780001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | ProteinID:CDY66883 | ProteinID:CDY66883.1 | SEG:seg |
| SUPFAM:SSF117281 | UniParc:UPI0004EEB6E2 | UniProt:A0A078JH14 | MapMan:35.1 | : | : |
Description
BnaCnng52730DBnaCnng52730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JH14]
Coordinates
chrLK035552:-:7593..8972
Molecular Weight (calculated)
23893.8 Da
IEP (calculated)
6.263
GRAVY (calculated)
0.026
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHILFLYLF RLKIKIISNS LIFFFSFPTE PNLRWFTLCR KPDKTVNKTE SLSELSNLVA VDHKLYAINK EDDVTSCSSN VFFLDCRTHT WVVEGLVDSA
101: SGRSVFLTKD LVEFGSACLI EKIYYCYGST GEFLWSNNSA EVDGWKKVEG LEGLSKLARY SNVNLVDCSG KMVVFWDKYV PAGNKEKMIW CAEISLEMRS
201: SGEQGTMVPL
101: SGRSVFLTKD LVEFGSACLI EKIYYCYGST GEFLWSNNSA EVDGWKKVEG LEGLSKLARY SNVNLVDCSG KMVVFWDKYV PAGNKEKMIW CAEISLEMRS
201: SGEQGTMVPL
001: MSSSPEKKRR KKLSPESNSL PNDLIVTILA RLSQSYYPKL SLVSKTFRAI LASPELYQTR ILLSRTETFL YVCLSFPGEP NPGWFTLYRK PNQTLTTKKK
101: KNSVHLLAPI LNSPPVEFPS LIAVGSYLYA FRAAIEEGTS DSLNCVEVYN TDTQTWIPVP PNKRIFKLQH MKGMLYMKVS KLLSFVAQDA EELAPLFPKL
201: RSLLSTEVVA FKPKVSEGYE VLGFSVNTDL GRGSFCMIEE ITYHYDPSVK FRWRRRQGGV WRSLVGLEGL PKFARYSSVK LADCGGKLVV LWHKYVPASG
301: YEEKMVWCAE ISLEKRSKKE IWGKIEWFDA VLRVPKYYQF VGAKSATV
101: KNSVHLLAPI LNSPPVEFPS LIAVGSYLYA FRAAIEEGTS DSLNCVEVYN TDTQTWIPVP PNKRIFKLQH MKGMLYMKVS KLLSFVAQDA EELAPLFPKL
201: RSLLSTEVVA FKPKVSEGYE VLGFSVNTDL GRGSFCMIEE ITYHYDPSVK FRWRRRQGGV WRSLVGLEGL PKFARYSSVK LADCGGKLVV LWHKYVPASG
301: YEEKMVWCAE ISLEKRSKKE IWGKIEWFDA VLRVPKYYQF VGAKSATV
Arabidopsis Description
F-box protein At2g20380 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK64]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.