Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G48990.1 | Thale cress | cytosol, plastid | 56.35 | 57.26 |
| AT4G05620.1 | Thale cress | plastid | 18.52 | 53.03 |
| AT5G48980.1 | Thale cress | nucleus | 54.76 | 51.88 |
| CDY51548 | Canola | plastid | 45.24 | 50.44 |
| Bra018362.1-P | Field mustard | cytosol | 48.68 | 48.81 |
| AT4G39580.1 | Thale cress | cytosol | 47.88 | 48.27 |
| CDY02008 | Canola | cytosol | 47.09 | 48.24 |
| AT5G49000.2 | Thale cress | nucleus | 46.83 | 47.58 |
| CDY57171 | Canola | cytosol | 41.27 | 47.56 |
| AT4G39550.1 | Thale cress | nucleus | 48.94 | 47.19 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 34.66 | 45.02 |
| AT5G51250.1 | Thale cress | cytosol | 43.12 | 44.29 |
| AT5G38680.1 | Thale cress | cytosol | 41.8 | 44.26 |
| AT4G39560.1 | Thale cress | plastid | 30.95 | 43.98 |
| AT1G19930.1 | Thale cress | cytosol | 39.95 | 43.9 |
| AT2G20380.1 | Thale cress | cytosol | 39.42 | 42.82 |
| CDY51549 | Canola | plastid | 20.37 | 42.54 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 43.65 | 41.77 |
| AT4G25710.1 | Thale cress | cytosol | 42.06 | 40.77 |
| AT3G08810.1 | Thale cress | nucleus | 36.77 | 40.52 |
| AT1G77880.1 | Thale cress | cytosol | 13.76 | 40.0 |
| AT4G11770.1 | Thale cress | cytosol | 41.8 | 39.9 |
| AT4G34170.1 | Thale cress | cytosol | 30.69 | 39.59 |
| AT1G60570.1 | Thale cress | cytosol | 39.68 | 39.37 |
| AT3G09750.1 | Thale cress | mitochondrion | 16.4 | 38.51 |
| AT4G11750.1 | Thale cress | cytosol | 39.15 | 38.34 |
| AT1G61540.1 | Thale cress | cytosol | 40.74 | 38.31 |
| AT4G23580.1 | Thale cress | cytosol | 38.62 | 38.12 |
| CDY66883 | Canola | extracellular | 21.16 | 38.1 |
| AT4G39590.1 | Thale cress | plastid | 40.48 | 38.06 |
| AT2G03460.1 | Thale cress | plastid | 25.4 | 37.35 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 38.36 | 37.18 |
| AT4G33900.1 | Thale cress | cytosol | 36.77 | 36.68 |
| AT4G39290.1 | Thale cress | cytosol | 34.66 | 35.89 |
| AT3G43710.1 | Thale cress | cytosol | 35.71 | 35.71 |
| AT4G11745.1 | Thale cress | cytosol | 25.4 | 33.8 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:830114 | UniProt:A0A1P8B689 | ProteinID:AEE87092.1 | ProteinID:ANM67109.1 |
| ArrayExpress:AT4G39600 | EnsemblPlantsGene:AT4G39600 | RefSeq:AT4G39600 | TAIR:AT4G39600 | RefSeq:AT4G39600-TAIR-G | EnsemblPlants:AT4G39600.2 |
| ProteinID:CAB44695.1 | ProteinID:CAB80623.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | RefSeq:NP_001328959.1 | RefSeq:NP_195670.1 |
| PFAM:PF00646 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI000848E6BA | SEG:seg | : | : | : | : |
Description
Galactose oxidase/kelch repeat superfamily protein [Source:TAIR;Acc:AT4G39600]
Coordinates
chr4:-:18388890..18390797
Molecular Weight (calculated)
42196.6 Da
IEP (calculated)
7.872
GRAVY (calculated)
-0.198
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSTASATT GMKGKKPSIE IATSNPSLPE DLVVSCLARV SRLYYPTLSL VSKSFRSLIA SPDLYKTRSL LGRTESCLYL CLRYSPEDNP RWFTLCRKPN
101: RRTLSKEKNE SSGNLLVPIP IINSPPLEWS SIVAVGSHLY AINGPIEDAP CSNVSFLDCR SHTWLEAPSM RVAHTNSQLD GKMYLAGSSE NVDSLNCIQV
201: FSTKTQTWKP VPFQKRIFGV GDLEGKIYTI CRTECGQGVT IKPKDLTCDV VGFCGEKDWS SVCMIGNIVY FYRPNGEFLW IYSGKGESAR RNLKGLEGLP
301: KFDDYASVKL VDYGGKLMVL WDTYVPESES KEKMIWCAEI SLQKKCNNEE IWGTVEWFDA VLTVPEDCKF VRAIAATV
101: RRTLSKEKNE SSGNLLVPIP IINSPPLEWS SIVAVGSHLY AINGPIEDAP CSNVSFLDCR SHTWLEAPSM RVAHTNSQLD GKMYLAGSSE NVDSLNCIQV
201: FSTKTQTWKP VPFQKRIFGV GDLEGKIYTI CRTECGQGVT IKPKDLTCDV VGFCGEKDWS SVCMIGNIVY FYRPNGEFLW IYSGKGESAR RNLKGLEGLP
301: KFDDYASVKL VDYGGKLMVL WDTYVPESES KEKMIWCAEI SLQKKCNNEE IWGTVEWFDA VLTVPEDCKF VRAIAATV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.