Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G77880.1 | Thale cress | cytosol | 27.27 | 27.69 |
| AT3G09750.1 | Thale cress | mitochondrion | 27.27 | 22.36 |
| AT4G39560.1 | Thale cress | plastid | 43.18 | 21.43 |
| AT4G39600.2 | Thale cress | plastid | 53.03 | 18.52 |
| AT4G39550.1 | Thale cress | nucleus | 49.24 | 16.58 |
| AT3G08810.1 | Thale cress | nucleus | 42.42 | 16.33 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 44.7 | 15.86 |
| AT2G20380.1 | Thale cress | cytosol | 41.67 | 15.8 |
| AT5G48980.1 | Thale cress | nucleus | 46.97 | 15.54 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 34.09 | 15.46 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 46.21 | 15.44 |
| AT5G38680.1 | Thale cress | cytosol | 41.67 | 15.41 |
| AT5G51250.1 | Thale cress | cytosol | 41.67 | 14.95 |
| AT4G39580.1 | Thale cress | cytosol | 42.42 | 14.93 |
| AT1G19930.1 | Thale cress | cytosol | 38.64 | 14.83 |
| AT5G49000.2 | Thale cress | nucleus | 41.67 | 14.78 |
| AT4G11750.1 | Thale cress | cytosol | 43.18 | 14.77 |
| AT4G23580.1 | Thale cress | cytosol | 41.67 | 14.36 |
| AT4G33900.1 | Thale cress | cytosol | 40.91 | 14.25 |
| AT4G25710.1 | Thale cress | cytosol | 40.91 | 13.85 |
| AT4G11770.1 | Thale cress | cytosol | 40.91 | 13.64 |
| AT4G34170.1 | Thale cress | cytosol | 28.79 | 12.97 |
| AT1G61540.1 | Thale cress | cytosol | 39.39 | 12.94 |
| AT1G60570.1 | Thale cress | cytosol | 37.12 | 12.86 |
| AT3G43710.1 | Thale cress | cytosol | 36.36 | 12.7 |
| AT4G39590.1 | Thale cress | plastid | 37.88 | 12.44 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 36.36 | 12.31 |
| AT4G39290.1 | Thale cress | cytosol | 31.06 | 11.23 |
| AT4G11745.1 | Thale cress | cytosol | 6.82 | 3.17 |
| AT2G03460.1 | Thale cress | plastid | 6.06 | 3.11 |
Protein Annotations
| ArrayExpress:AT4G05620 | EnsemblPlants:AT4G05620.1 | EnsemblPlantsGene:AT4G05620 | EntrezGene:825934 | GO:GO:0008150 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | PO:PO:0009005 | ProteinID:AEE82539.1 | ProteinID:CAB77926.1 | RefSeq:AT4G05620 | RefSeq:AT4G05620-TAIR-G |
| RefSeq:NP_192471.1 | TAIR:AT4G05620 | TAIR:AT4G05620.1 | Unigene:At.65330 | UniParc:UPI00000A6D7B | UniProt:Q9M0U2 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative F-box protein At4g05620 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U2]
Coordinates
chr4:-:2985051..2985449
Molecular Weight (calculated)
14890.4 Da
IEP (calculated)
10.309
GRAVY (calculated)
0.045
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPVTTNGK EPLVRKQKKS LSLPHDVLVS CLAHVSRLHY SILSLVLKNF RSLIASPELY KTRSLLGRIE SCLYVCLRFP NESHPRWFTL YMKPNQIVAN
101: NKSNCNLLVP TPTISSSPAH WLCLIAVGSR IY
101: NKSNCNLLVP TPTISSSPAH WLCLIAVGSR IY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.