Factsheet for AT5G48980.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G48990.1	Thale cress	cytosol, plastid	61.4	65.86
AT4G39600.2	Thale cress	plastid	51.88	54.76
CDY51548	Canola	plastid	42.61	50.15
CDY02008	Canola	cytosol	46.37	50.14
Bra018362.1-P	Field mustard	cytosol	47.12	49.87
CDY57171	Canola	cytosol	39.6	48.17
AT2G20380.1	Thale cress	cytosol	41.35	47.41
AT4G05620.1	Thale cress	plastid	15.54	46.97
CDY51549	Canola	plastid	21.05	46.41
AT5G49000.2	Thale cress	nucleus	40.85	43.82
AT4G39550.1	Thale cress	nucleus	41.35	42.09
CDY66883	Canola	extracellular	21.55	40.95
AT5G38680.1	Thale cress	cytosol	36.34	40.62
AT4G39580.1	Thale cress	cytosol	38.1	40.53
AT3G08810.1	Thale cress	nucleus	33.83	39.36
AT5G38670.1	Thale cress	cytosol, plastid	28.32	38.83
AT4G39570.1	Thale cress	nucleus, plastid	37.84	38.23
AT5G51250.1	Thale cress	cytosol	34.84	37.77
AT1G77880.1	Thale cress	cytosol	12.28	37.69
AT1G19930.1	Thale cress	cytosol	32.33	37.5
AT4G39560.1	Thale cress	plastid	24.56	36.84
AT4G25710.1	Thale cress	cytosol	35.09	35.9
AT4G34170.1	Thale cress	cytosol	26.07	35.49
AT3G06570.1	Thale cress	cytosol, plastid	34.59	35.38
AT4G11770.1	Thale cress	cytosol	35.09	35.35
AT1G60570.1	Thale cress	cytosol	32.83	34.38
AT4G33900.1	Thale cress	cytosol	32.33	34.04
AT4G39590.1	Thale cress	plastid	34.09	33.83
AT4G23580.1	Thale cress	cytosol	32.33	33.68
AT1G61540.1	Thale cress	cytosol	33.83	33.58
AT3G09750.1	Thale cress	mitochondrion	13.53	33.54
AT2G03460.1	Thale cress	plastid	21.55	33.46
AT4G11750.1	Thale cress	cytosol	32.08	33.16
AT3G43710.1	Thale cress	cytosol	30.33	32.01
AT4G39290.1	Thale cress	cytosol	28.57	31.23
AT4G11745.1	Thale cress	cytosol	19.3	27.11

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:834957	ProteinID:AED95752.1	ArrayExpress:AT5G48980	EnsemblPlantsGene:AT5G48980
RefSeq:AT5G48980	TAIR:AT5G48980	RefSeq:AT5G48980-TAIR-G	EnsemblPlants:AT5G48980.1	TAIR:AT5G48980.1	Unigene:At.29814
ProteinID:BAB10322.1	EMBL:BT030316	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	RefSeq:NP_199709.1
PFAM:PF00646	PFAM:PF01344	PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	UniProt:Q9FI72
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000009E86D	SEG:seg	:

Description

F-box/kelch-repeat protein At5g48980 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI72]

Coordinates

chr5:+:19860708..19862052

Molecular Weight (calculated)

45724.1 Da

IEP (calculated)

9.782

GRAVY (calculated)

-0.391

Length

399 amino acids

Sequence
(BLAST)

001: MADSQRLSTA SGVKDGQPPW KKKKLSNDTT SNPSLPYDVI LIILARVSRS YYTNLSLVSK SFRSILTSPE LYKTRTLLGK TENFLYVCLR FPDEANPRWF
101: TLYRKPNQTL TDHTTKKKKK KKKKEEKSSV NLLAPISILN SHPVEWSAII SVDHYLYAIS ADIEKAPYSN VPYLDCRTHT WNEAPRMRLA HTNSEFEGIV
201: YLPGSFESPD SLNCVEVYNT MTQTWKPVPP EKRMFKLENL EKKIYYKSFH LDSRAGKGLS LSYKSKHLTC GLVVLDTVDS YLRSSCMIEN IAYFYRKGNF
301: IWRGLDGKIL VYGKIEGLEG LPKFSRYSSV QLAEYGGKLV VLWDKYVPAS GYKEKMIWCA EISLEKRNGK EIWGNVEWFD AVLTVPKSYK ILCATAATL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.