Factsheet for AT4G39580.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72687	Canola	cytosol	66.93	74.93
CDY53174	Canola	cytosol	62.13	72.14
AT4G39550.1	Thale cress	nucleus	52.53	50.26
AT5G49000.2	Thale cress	nucleus	49.33	49.73
AT4G39600.2	Thale cress	plastid	48.27	47.88
AT5G38670.1	Thale cress	cytosol, plastid	37.07	47.77
AT4G39560.1	Thale cress	plastid	33.6	47.37
AT5G51250.1	Thale cress	cytosol	46.13	47.01
AT1G19930.1	Thale cress	cytosol	42.67	46.51
AT4G39570.1	Thale cress	nucleus, plastid	46.4	44.05
AT4G34170.1	Thale cress	cytosol	34.13	43.69
AT5G38680.1	Thale cress	cytosol	41.33	43.42
AT3G08810.1	Thale cress	nucleus	39.2	42.86
AT4G05620.1	Thale cress	plastid	14.93	42.42
AT4G11770.1	Thale cress	cytosol	44.0	41.67
AT5G48990.1	Thale cress	cytosol, plastid	41.07	41.4
AT4G23580.1	Thale cress	cytosol	41.87	40.99
AT1G61540.1	Thale cress	cytosol	43.2	40.3
AT1G60570.1	Thale cress	cytosol	40.53	39.9
AT3G43710.1	Thale cress	cytosol	40.0	39.68
AT4G25710.1	Thale cress	cytosol	40.8	39.23
AT3G06570.1	Thale cress	cytosol, plastid	40.8	39.23
AT4G39590.1	Thale cress	plastid	41.87	39.05
AT4G33900.1	Thale cress	cytosol	38.93	38.52
AT2G03460.1	Thale cress	plastid	26.4	38.52
AT3G09750.1	Thale cress	mitochondrion	16.53	38.51
AT4G11750.1	Thale cress	cytosol	39.47	38.34
AT5G48980.1	Thale cress	nucleus	40.53	38.1
AT4G39290.1	Thale cress	cytosol	37.07	38.08
AT1G77880.1	Thale cress	cytosol	12.8	36.92
AT4G11745.1	Thale cress	cytosol	26.93	35.56
AT2G20380.1	Thale cress	cytosol	32.8	35.34

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:830112	ProteinID:AEE87090.1	ArrayExpress:AT4G39580	EnsemblPlantsGene:AT4G39580
RefSeq:AT4G39580	TAIR:AT4G39580	RefSeq:AT4G39580-TAIR-G	EnsemblPlants:AT4G39580.1	TAIR:AT4G39580.1	Unigene:At.64220
ProteinID:CAB44693.1	ProteinID:CAB80621.1	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	RefSeq:NP_195668.1	PFAM:PF00646
PFAM:PF01344	PO:PO:0000293	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	UniProt:Q9SVA0	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI00000A3987	SEG:seg	:	:

Description

F-box/kelch-repeat protein At4g39580 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA0]

Coordinates

chr4:-:18385684..18386811

Molecular Weight (calculated)

42817.3 Da

IEP (calculated)

7.312

GRAVY (calculated)

-0.170

Length

375 amino acids

Sequence
(BLAST)

001: MNEEEAPSEQ KKTLSLVPSP TTNLFLPDDI LLSSLSRISR LYYPTFSLVS KSFRSLIASP ELYQTRSILG RTESCLYVSL RLLNDSNLRW YTLCRVPDRK
101: LTNFSGGHLL VPILSRYAPP AHWSSVVAVD YNIYAIGGPI NDAPSSSVSV LDCQCEKWRE APSMRVARNY PTATVLDGKI YVAGGCEDCT SLDCIEVFDP
201: KTQTWDSVAS PGTERCERLV YKSVGIEGKY HLFGGAGHVA YDPKEGRWDS VGMDMEMGRT WVSYCVINNI LFYYNDREFK WYDYKGRFWR KLMGLERLIK
301: FLCYSRVNLA AYGEKMAVLW DTFVPSSSKN KMIWCAEITI ERHDIYEICG KTEWFDVVLR VPKSYELVHV LAATV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.