Factsheet for AT1G19930.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G60570.1	Thale cress	cytosol	56.98	51.44
AT4G39550.1	Thale cress	nucleus	53.49	46.94
AT3G08810.1	Thale cress	nucleus	45.64	45.77
AT5G51250.1	Thale cress	cytosol	47.38	44.29
AT5G49000.2	Thale cress	nucleus	47.38	43.82
AT4G39560.1	Thale cress	plastid	33.43	43.23
AT5G38680.1	Thale cress	cytosol	44.48	42.86
AT4G39580.1	Thale cress	cytosol	46.51	42.67
AT4G25710.1	Thale cress	cytosol	48.26	42.56
AT4G39570.1	Thale cress	nucleus, plastid	47.38	41.27
AT4G39600.2	Thale cress	plastid	43.9	39.95
AT5G38670.1	Thale cress	cytosol, plastid	33.43	39.52
AT4G34170.1	Thale cress	cytosol	33.14	38.91
AT4G05620.1	Thale cress	plastid	14.83	38.64
AT4G11770.1	Thale cress	cytosol	43.31	37.63
AT5G48990.1	Thale cress	cytosol, plastid	40.41	37.37
AT4G23580.1	Thale cress	cytosol	40.99	36.81
AT3G06570.1	Thale cress	cytosol, plastid	41.28	36.41
AT4G39590.1	Thale cress	plastid	42.44	36.32
AT4G11750.1	Thale cress	cytosol	40.7	36.27
AT3G43710.1	Thale cress	cytosol	38.95	35.45
AT1G77880.1	Thale cress	cytosol	13.37	35.38
AT2G03460.1	Thale cress	plastid	26.16	35.02
AT3G09750.1	Thale cress	mitochondrion	16.28	34.78
AT2G20380.1	Thale cress	cytosol	35.17	34.77
AT1G61540.1	Thale cress	cytosol	40.12	34.33
AT4G33900.1	Thale cress	cytosol	37.79	34.3
AT4G11745.1	Thale cress	cytosol	27.62	33.45
AT5G48980.1	Thale cress	nucleus	37.5	32.33
AT4G39290.1	Thale cress	cytosol	34.01	32.05

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:838582	EMBL:AC007797	ProteinID:AEE29914.1	ArrayExpress:AT1G19930
EnsemblPlantsGene:AT1G19930	RefSeq:AT1G19930	TAIR:AT1G19930	RefSeq:AT1G19930-TAIR-G	EnsemblPlants:AT1G19930.1	TAIR:AT1G19930.1
Unigene:At.51684	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	RefSeq:NP_173422.1
PFAM:PF00646	PFAM:PF01344	PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	UniProt:Q3ED92
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0000162E24	SEG:seg	:

Description

Putative F-box/kelch-repeat protein At1g19930 [Source:UniProtKB/Swiss-Prot;Acc:Q3ED92]

Coordinates

chr1:+:6917020..6918138

Molecular Weight (calculated)

38769.5 Da

IEP (calculated)

8.573

GRAVY (calculated)

-0.136

Length

344 amino acids

Sequence
(BLAST)

001: MKKNKVPTEL IFSLPNDLLV NILARVSRLD YPILSLVSKR FSSVLTLPEL YQTRSLVGLT ENCLYVCLLS SRADRIPSWF KLCRRPILAS DTRKSSGYVL
101: ATIPIPHSPP LHRSSLVAVG SNIYNIGGSI SQSQSSSVSI LDCWSHTWLE GPSMQVEREY PSASLLDGKI YVTGGCRLTF HGCGDQTDNV VVDGKLHSCG
201: GYKGVAYNPN DGRWDSLGSE MNLGLKWSSS CVIENVIYYY YHNENIKWYD TKVRSWRTLN GLKTLPRFAR YANVRLADYG GKMALFWDKF TGCGNQNRMI
301: WCAIIALERR NNEEIWGNVE WSDAVLPHQV PMAYVCEYVV AVNV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.