Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G51250.1 | Thale cress | cytosol | 50.51 | 53.53 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 38.72 | 51.89 |
| AT3G08810.1 | Thale cress | nucleus | 44.87 | 51.02 |
| AT2G03460.1 | Thale cress | plastid | 30.77 | 46.69 |
| Bra036150.1-P | Field mustard | plastid | 44.36 | 46.63 |
| AT5G38680.1 | Thale cress | cytosol | 42.56 | 46.5 |
| AT3G09750.1 | Thale cress | mitochondrion | 18.21 | 44.1 |
| Bra029716.1-P | Field mustard | mitochondrion | 38.97 | 43.06 |
| AT5G49000.2 | Thale cress | nucleus | 41.03 | 43.01 |
| AT4G39560.1 | Thale cress | plastid | 29.23 | 42.86 |
| CDY29974 | Canola | plasma membrane | 36.15 | 42.73 |
| AT4G25710.1 | Thale cress | cytosol | 42.56 | 42.56 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 42.05 | 41.52 |
| CDY07711 | Canola | extracellular | 37.44 | 41.48 |
| Bra000083.1-P | Field mustard | extracellular | 37.44 | 41.48 |
| AT1G19930.1 | Thale cress | cytosol | 36.41 | 41.28 |
| AT4G39550.1 | Thale cress | nucleus | 41.28 | 41.07 |
| CDX78384 | Canola | cytosol | 15.13 | 40.97 |
| AT4G39580.1 | Thale cress | cytosol | 39.23 | 40.8 |
| Bra029718.1-P | Field mustard | nucleus | 41.28 | 40.55 |
| CDY16283 | Canola | cytosol | 15.13 | 40.41 |
| CDY36006 | Canola | cytosol | 22.56 | 39.82 |
| Bra006063.1-P | Field mustard | cytosol | 18.46 | 38.92 |
| AT4G39600.2 | Thale cress | plastid | 37.18 | 38.36 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 36.41 | 38.17 |
| CDY27975 | Canola | nucleus, plastid | 32.31 | 37.95 |
| AT1G60570.1 | Thale cress | cytosol | 36.92 | 37.8 |
| AT4G05620.1 | Thale cress | plastid | 12.31 | 36.36 |
| CDY62432 | Canola | golgi | 40.0 | 35.7 |
| AT1G77880.1 | Thale cress | cytosol | 11.79 | 35.38 |
| AT4G34170.1 | Thale cress | cytosol | 26.41 | 35.15 |
| AT4G11770.1 | Thale cress | cytosol | 35.64 | 35.1 |
| AT5G48980.1 | Thale cress | nucleus | 35.38 | 34.59 |
| AT3G43710.1 | Thale cress | cytosol | 33.33 | 34.39 |
| AT4G23580.1 | Thale cress | cytosol | 33.33 | 33.94 |
| AT1G61540.1 | Thale cress | cytosol | 34.87 | 33.83 |
| AT4G11750.1 | Thale cress | cytosol | 33.08 | 33.42 |
| AT2G20380.1 | Thale cress | cytosol | 29.49 | 33.05 |
| AT4G39590.1 | Thale cress | plastid | 32.82 | 31.84 |
| AT4G39290.1 | Thale cress | cytosol | 29.74 | 31.78 |
| AT4G33900.1 | Thale cress | cytosol | 30.0 | 30.87 |
| AT4G11745.1 | Thale cress | cytosol | 21.79 | 29.93 |
| CDX81183 | Canola | cytosol | 14.1 | 23.21 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:819836 | UniProt:A0A178V8P5 | ProteinID:AAG51323.1 |
| ProteinID:AEE74416.1 | EMBL:AF370336 | ArrayExpress:AT3G06570 | EnsemblPlantsGene:AT3G06570 | RefSeq:AT3G06570 | TAIR:AT3G06570 |
| RefSeq:AT3G06570-TAIR-G | EnsemblPlants:AT3G06570.1 | TAIR:AT3G06570.1 | EMBL:AY062994 | Unigene:At.17588 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | InterPro:Kelch_2 | RefSeq:NP_566286.1 | ProteinID:OAP01322.1 | PFAM:PF00646 |
| PFAM:PF01344 | PFAM:PF07646 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50181 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q94K34 | SMART:SM00256 | SUPFAM:SSF117281 |
| SUPFAM:SSF81383 | UniParc:UPI00000AB25D | SEG:seg | : | : | : |
Description
F-box/kelch-repeat protein At3g06570 [Source:UniProtKB/Swiss-Prot;Acc:Q94K34]
Coordinates
chr3:-:2047219..2048553
Molecular Weight (calculated)
44559.9 Da
IEP (calculated)
6.313
GRAVY (calculated)
-0.245
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSMLSPPVK KRKIVAPQSQ SASASFQSLP DDLILSIVAR VPRLYHRTVS LVCKSFRSLL VSPELYKARS VSGHTESCLY LSIACYPDYR MFTLCRKPDQ
101: TLTTSEEEEK KKSNGYYLAP VPDPDSHPVY FSSLVTVGSD IYNIAGSHAS SNVSILDCRS NTWREAPRLG VELTSVSASV LDRKIFVVGM YADDEESESK
201: NDFFEVLDTE THTWDPQPFN CSETKDKFLN CRTAFIDGKF LVKPWIHRGV VAYNSKESRW EPVQTKMAMS MFNDSYCQIH NVIYLAFDGR IRWYDDALNC
301: WGDVQGLLEL GNIPHGPSCV RLADYRGNIA VFWFRYLPDN DDYKWKMIWC AEIALERRTS WEIWGKVLWF DPVLTVPADY EFVKALAATV
101: TLTTSEEEEK KKSNGYYLAP VPDPDSHPVY FSSLVTVGSD IYNIAGSHAS SNVSILDCRS NTWREAPRLG VELTSVSASV LDRKIFVVGM YADDEESESK
201: NDFFEVLDTE THTWDPQPFN CSETKDKFLN CRTAFIDGKF LVKPWIHRGV VAYNSKESRW EPVQTKMAMS MFNDSYCQIH NVIYLAFDGR IRWYDDALNC
301: WGDVQGLLEL GNIPHGPSCV RLADYRGNIA VFWFRYLPDN DDYKWKMIWC AEIALERRTS WEIWGKVLWF DPVLTVPADY EFVKALAATV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.