Factsheet for Bra029718.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
extracellular 2
nucleus 3
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029716.1-P	Field mustard	mitochondrion	87.66	98.58
CDY36006	Canola	cytosol	53.9	96.83
CDY27975	Canola	nucleus, plastid	69.52	83.13
Bra000083.1-P	Field mustard	extracellular	55.92	63.07
Bra001343.1-P	Field mustard	nucleus	31.23	46.62
AT3G08810.1	Thale cress	nucleus	38.79	44.9
AT5G51250.1	Thale cress	cytosol	41.31	44.57
Bra036150.1-P	Field mustard	plastid	41.56	44.47
Bra006063.1-P	Field mustard	cytosol	20.4	43.78
Bra023735.1-P	Field mustard	nucleus	39.8	42.25
Bra040994.1-P	Field mustard	cytosol	9.57	42.22
AT3G06570.1	Thale cress	cytosol, plastid	40.55	41.28
AT2G03460.1	Thale cress	plastid	26.7	41.25
Bra011856.1-P	Field mustard	nucleus	19.65	40.84
Bra032688.1-P	Field mustard	cytosol	33.25	37.39
Bra033628.1-P	Field mustard	nucleus	36.78	37.34
Bra011854.1-P	Field mustard	plastid	36.02	36.76
Bra030332.1-P	Field mustard	cytosol	33.25	33.76
Bra022509.1-P	Field mustard	cytosol	28.72	33.63
Bra011855.1-P	Field mustard	plastid	20.4	32.53
Bra011852.1-P	Field mustard	cytosol	28.97	32.21
Bra040886.1-P	Field mustard	cytosol	31.49	32.13
Bra018362.1-P	Field mustard	cytosol	30.48	32.1
Bra017635.1-P	Field mustard	plasma membrane	30.23	32.0
Bra011853.1-P	Field mustard	cytosol	32.75	31.63
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	21.16	30.55
Bra011851.1-P	Field mustard	cytosol, plastid	31.74	30.36
Bra011300.1-P	Field mustard	cytosol	28.21	29.32
Bra017634.1-P	Field mustard	extracellular	14.61	27.36
Bra002939.1-P	Field mustard	cytosol	11.84	24.61

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra029718	EnsemblPlants:Bra029718.1	EnsemblPlants:Bra029718.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	UniProt:M4ELP9	PFAM:PF00646	PFAM:PF07646	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002547CF7	SEG:seg

Description

AT5G51250 (E=2e-066) | kelch repeat-containing F-box family protein

Coordinates

chrA05:-:22524731..22525924

Molecular Weight (calculated)

44945.2 Da

IEP (calculated)

8.967

GRAVY (calculated)

-0.189

Length

397 amino acids

Sequence
(BLAST)

001: MERLIKGDSV STRRKRKTTT TTSIREKKKK KLTSSSSLPY DLLVMIVARV PRSYYRTLSL VSKSFRCMVV SPELYKVRSL LGLTETCLYV CLRFGFTCYK
101: WYTLSSKSSD GGGYVLTRVL TLDDNSPRMM GLCYSDLVAV GSDIYNIGVA DKNKTMPTSG VSILDCKTHR WRKSPRMPVE LTELSATVLD RKIYVLGRRF
201: HQDDGSWKSS FEVFNTNTQT WDLPSCGGFD SARINFLIDG KLHVVTLFDG VFAFDSKQCR WDLVEQYPST GTMCSGSFCE VDNVLYSVSK DGALTWYDSD
301: NTSWRDLNGL VGLPKLPSPL DGYGSYVKLT GYGGGKMMVF WNCNLGIHRP FQRDTIYCAE IALERRNGDC WGKLEWFDSM LLVPLETQFV KVLAVTL

Best Arabidopsis Sequence Match ( AT3G06570.1 )
(BLAST)

001: MSSMLSPPVK KRKIVAPQSQ SASASFQSLP DDLILSIVAR VPRLYHRTVS LVCKSFRSLL VSPELYKARS VSGHTESCLY LSIACYPDYR MFTLCRKPDQ
101: TLTTSEEEEK KKSNGYYLAP VPDPDSHPVY FSSLVTVGSD IYNIAGSHAS SNVSILDCRS NTWREAPRLG VELTSVSASV LDRKIFVVGM YADDEESESK
201: NDFFEVLDTE THTWDPQPFN CSETKDKFLN CRTAFIDGKF LVKPWIHRGV VAYNSKESRW EPVQTKMAMS MFNDSYCQIH NVIYLAFDGR IRWYDDALNC
301: WGDVQGLLEL GNIPHGPSCV RLADYRGNIA VFWFRYLPDN DDYKWKMIWC AEIALERRTS WEIWGKVLWF DPVLTVPADY EFVKALAATV

Arabidopsis Description

F-box/kelch-repeat protein At3g06570 [Source:UniProtKB/Swiss-Prot;Acc:Q94K34]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.