Factsheet for Bra017635.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49284	Canola	extracellular, plasma membrane, vacuole	85.6	86.99
Bra017634.1-P	Field mustard	extracellular	45.07	79.72
Bra033628.1-P	Field mustard	nucleus	41.6	39.9
Bra011300.1-P	Field mustard	cytosol	40.27	39.53
Bra032688.1-P	Field mustard	cytosol	36.8	39.09
Bra001343.1-P	Field mustard	nucleus	27.47	38.72
Bra011854.1-P	Field mustard	plastid	39.73	38.3
Bra011856.1-P	Field mustard	nucleus	19.2	37.7
Bra022509.1-P	Field mustard	cytosol	33.6	37.17
Bra036150.1-P	Field mustard	plastid	36.27	36.66
Bra023735.1-P	Field mustard	nucleus	36.27	36.36
Bra040994.1-P	Field mustard	cytosol	8.53	35.56
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	25.87	35.27
Bra018362.1-P	Field mustard	cytosol	35.2	35.01
Bra011855.1-P	Field mustard	plastid	22.93	34.54
Bra030332.1-P	Field mustard	cytosol	35.47	34.02
Bra040886.1-P	Field mustard	cytosol	34.67	33.42
Bra011852.1-P	Field mustard	cytosol	31.2	32.77
Bra029716.1-P	Field mustard	mitochondrion	30.67	32.58
Bra000083.1-P	Field mustard	extracellular	30.4	32.39
Bra011853.1-P	Field mustard	cytosol	35.47	32.36
Bra006063.1-P	Field mustard	cytosol	14.93	30.27
Bra029718.1-P	Field mustard	nucleus	32.0	30.23
Bra011851.1-P	Field mustard	cytosol, plastid	33.07	29.88
Bra002939.1-P	Field mustard	cytosol	14.4	28.27

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra017635	EnsemblPlants:Bra017635.1	EnsemblPlants:Bra017635.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4DMA3	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00025411FA
SEG:seg	:	:	:	:	:

Description

AT4G33900 (E=8e-073) | kelch repeat-containing F-box family protein

Coordinates

chrA03:+:29446179..29447306

Molecular Weight (calculated)

43011.3 Da

IEP (calculated)

7.696

GRAVY (calculated)

-0.241

Length

375 amino acids

Sequence
(BLAST)

001: MKVEVPPVLT LLMLPEELIL SCLVRVPRLY YPTLTLVSKS FRSLINSPEL CKTRSLLART ESCLYVWFQF QNDENTHWFT LYRNPYQTVD DNSQTNKLGG
101: YKLVPIPSLD SPPSAMSGVA AVGSDIYAVG GSIDGVSSSS VFVMDTHYHT WCKAPSMHVA RVSPSASVLD GKIYVTSGGG WGKLDNTNWM EVFDTKTRTW
201: EFMPSPGSES FDYENMALEG SIYVRSNEKG ETFKLNKGRW RAADLALTSG WTYNWKRLFC YCVIENVLYC YSSVDLYWYD FIDRQWREVK RLKGRLPMSS
301: KNDHYRLADY GGNLVFLWEE LVHTKNVQNK TLVWCAEISF KRRQRTEISG TVEWCDVVFI YTKQGDLMHV IATTA

Best Arabidopsis Sequence Match ( AT4G33900.1 )
(BLAST)

001: MEYGEEPSIK RFLMLPDDLV FNCLARVSRL HYPTLSLVSK KFRFLLASKE LYQTRILLGG TESCLYVCVR LHTDSEQLHW FIIYQGPNSS KKVLVPISSP
101: NFTSAALPGF VVVGHEIYAI GGGSENKNAS INATGSKTYN ALSSVMVMDS RSHTWREAPS MRVARVFPSA CTLDGRIYVT GGCENLNSMN WMEIFDTKTQ
201: TWEFLQIPSE EVCKGSEYLS ISYQRTVYVG SREKDVTYKM HKGKWRGADI CLNHGWSLDP SSCCVIENVF YRCSLGDVRW YDLKKREWAA LKGLEGLPTF
301: TNYYRNFKSA DHCGKLAISW EEYVLVDDET KIWCAEIAIQ KRQNGEIWGT LEWFDNVFIS SGPNRHVDLL VNALTATVW

Arabidopsis Description

F-box/kelch-repeat protein At4g33900 [Source:UniProtKB/Swiss-Prot;Acc:Q1PE27]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.