Factsheet for Bra011300.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75197	Canola	cytosol	90.31	93.24
AT3G43710.1	Thale cress	cytosol	52.88	53.44
Bra017635.1-P	Field mustard	plasma membrane	39.53	40.27
Bra033628.1-P	Field mustard	nucleus	39.53	38.62
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	27.23	37.82
Bra011856.1-P	Field mustard	nucleus	18.85	37.7
Bra011854.1-P	Field mustard	plastid	38.22	37.53
Bra017634.1-P	Field mustard	extracellular	20.68	37.26
Bra001343.1-P	Field mustard	nucleus	25.92	37.22
Bra032688.1-P	Field mustard	cytosol	34.03	36.83
Bra040886.1-P	Field mustard	cytosol	37.43	36.76
Bra011852.1-P	Field mustard	cytosol	34.03	36.41
Bra036150.1-P	Field mustard	plastid	34.29	35.31
Bra018362.1-P	Field mustard	cytosol	34.82	35.28
Bra022509.1-P	Field mustard	cytosol	31.15	35.1
Bra030332.1-P	Field mustard	cytosol	35.6	34.78
Bra023735.1-P	Field mustard	nucleus	34.03	34.76
Bra011855.1-P	Field mustard	plastid	22.51	34.54
Bra040994.1-P	Field mustard	cytosol	8.12	34.44
Bra011853.1-P	Field mustard	cytosol	35.08	32.6
Bra011851.1-P	Field mustard	cytosol, plastid	32.98	30.36
Bra006063.1-P	Field mustard	cytosol	14.66	30.27
Bra002939.1-P	Field mustard	cytosol	14.92	29.84
Bra029716.1-P	Field mustard	mitochondrion	27.49	29.75
Bra000083.1-P	Field mustard	extracellular	26.96	29.26
Bra029718.1-P	Field mustard	nucleus	29.32	28.21

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra011300	EnsemblPlants:Bra011300.1	EnsemblPlants:Bra011300.1-P	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	UniProt:M4D496	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI00025467FD	SEG:seg

Description

AT3G43710 (E=3e-109) | kelch repeat-containing F-box family protein

Coordinates

chrA01:+:2866436..2867584

Molecular Weight (calculated)

44010.3 Da

IEP (calculated)

8.963

GRAVY (calculated)

-0.202

Length

382 amino acids

Sequence
(BLAST)

001: MAKLIGEEPP VKRRRMTFNI LMLPDDLLLN CLARISRLHY PIISLVSKRL RSILTSSELY QTRTLLGRTE SCLYVGLSVH HDSKPLRWFT LCRRPNSSRK
101: VLVPVSSPHQ SLPEFWPAIA LVGTNVYVIG GLRNKIASSS VMVMDCHSHT WTEAPSMLVP RQSPFVCVLD GKIYVVGSQK DKTTWMEVFD TKTGNWEFVP
201: GPSEEICKRA TRYRCIGYGG KVYVTAEKGD TYELNRGRWR RGPLFIDRAG FSSSFCVIDN VLYRCNSCMI DWYDSEENLW ETVKGLKGLV PFYSGYIHAK
301: AANHGGKMVI LWEEKVYVNK LPHETKIWCA EITIERRQKE MWGTPDWFEV VLSTKNERFD QLSYVFFCYS LMNTTGETLF SF

Best Arabidopsis Sequence Match ( AT3G43710.1 )
(BLAST)

001: METTPKRSKT LLMSNGEERR SMTFGIEMLP DDLVLSCLAR VPRMYYPILS LVSKRFRSFL TSTELYQTRN LLGSTESFLF VCLRIVNDSN PLRLFTLCRR
101: PNSLTKVMVP ILSPDSIPKF LPDVVLVGSN IYVIGGLINN NASHKVMVMD CRSHTWREAQ GTCVARVSPS ACVLDGKIYV AGGCKNLDAT MWMEVFDTKT
201: ESWEFVSSPG EEICRDLTSC ESIGYDGNVY VESMKTYGLY ELHKGRWREG QYSMSRGGSL SSQCVIDNVL YRSWSYMVEW YDSENKLWNS LKGLEKLFIV
301: TNQYVPTKCV NYGGKLAVFW LEKVYAKHLH QETKIWCAVI TIERRKKEEI WGTREWFDLV FTTNEEMVDL THVFAATL

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g43710 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2B5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.