Factsheet for Bra006063.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78384	Canola	cytosol	70.81	90.97
CDY16283	Canola	cytosol	63.78	80.82
Bra040994.1-P	Field mustard	cytosol	19.46	40.0
CDX81183	Canola	cytosol	50.27	39.24
AT2G03460.1	Thale cress	plastid	45.95	33.07
Bra036150.1-P	Field mustard	plastid	62.16	31.0
Bra029716.1-P	Field mustard	mitochondrion	43.78	22.95
Bra011855.1-P	Field mustard	plastid	29.19	21.69
AT3G08810.1	Thale cress	nucleus	39.46	21.28
AT5G51250.1	Thale cress	cytosol	42.16	21.2
Bra023735.1-P	Field mustard	nucleus	42.16	20.86
Bra029718.1-P	Field mustard	nucleus	43.78	20.4
Bra000083.1-P	Field mustard	extracellular	37.84	19.89
AT3G06570.1	Thale cress	cytosol, plastid	38.92	18.46
Bra033628.1-P	Field mustard	nucleus	38.38	18.16
Bra022509.1-P	Field mustard	cytosol	31.89	17.4
Bra011854.1-P	Field mustard	plastid	35.14	16.71
Bra040886.1-P	Field mustard	cytosol	34.59	16.45
Bra002939.1-P	Field mustard	cytosol	16.76	16.23
Bra030332.1-P	Field mustard	cytosol	33.51	15.86
Bra001343.1-P	Field mustard	nucleus	22.7	15.79
Bra011853.1-P	Field mustard	cytosol	34.59	15.57
Bra018362.1-P	Field mustard	cytosol	30.81	15.12
Bra017635.1-P	Field mustard	plasma membrane	30.27	14.93
Bra011300.1-P	Field mustard	cytosol	30.27	14.66
Bra011851.1-P	Field mustard	cytosol, plastid	31.89	14.22
Bra032688.1-P	Field mustard	cytosol	25.41	13.31
Bra017634.1-P	Field mustard	extracellular	15.14	13.21
Bra011852.1-P	Field mustard	cytosol	24.86	12.89
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	8.65	5.82
Bra011856.1-P	Field mustard	nucleus	0.54	0.52

Protein Annotations

EnsemblPlants:Bra006063.1	EnsemblPlants:Bra006063.1-P	EnsemblPlantsGene:Bra006063	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SUPFAM:SSF117281
UniParc:UPI000253F893	UniProt:M4CPC5	MapMan:35.1	:	:	:

Description

AT2G03460 (E=4e-035) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G51250.1); Has 403 Blast hits to 395 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

Coordinates

chrA03:-:1825246..1825803

Molecular Weight (calculated)

21828.1 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.376

Length

185 amino acids

Sequence
(BLAST)

001: MKNSFEVFDT ETRVWDSLSA SDQGEEMSIS KKTVSIDGKF HVVTDEEVLA YDPKQGKWDM VGRGMRGLTI SDDYCVIGNV LYSVYEGVFK WYDTETRTWR
101: DLQGLVGLPK ITRHREFIRL GYYGGKMVVF WVHVIWPYYK KIWCAEISLE RRPDTSEIWG KVEWFDELHK TKIFYHVEKV LSTTL

Best Arabidopsis Sequence Match ( AT2G03460.1 )
(BLAST)

001: MAPSRSQAGS SYLESSSSVS ILDCRSHTWR EAPSLREGLC SVSSSVLDRK IYVAGSCLDG DSYTYKNSFE VFDTETQFWD PDTITCSKTE GDFYGCGTAC
101: IDGEFHVVPV GQKREAVAYN SKEGRWDMVG QQMDHYKFSA SCEIQNVLYS CTHGVFRWYD TNAMMWRDLK GLVGLPMFGS GANVKLADYG GKLTVLWEEE
201: LPSRGPDSGY KKMIRCAEIA LERRKSCEIW GIVEWFGDVL TEPVGYVVLE KVLDVTL

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q6RF47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.