Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78384 | Canola | cytosol | 39.66 | 65.28 |
| CDY16283 | Canola | cytosol | 36.29 | 58.9 |
| Bra006063.1-P | Field mustard | cytosol | 39.24 | 50.27 |
| CDY36006 | Canola | cytosol | 22.36 | 23.98 |
| CDY51549 | Canola | plastid | 17.72 | 23.2 |
| AT2G03460.1 | Thale cress | plastid | 22.78 | 21.01 |
| CDY13275 | Canola | mitochondrion | 17.3 | 19.71 |
| CDY41985 | Canola | plastid | 21.1 | 18.8 |
| CDY42633 | Canola | plastid | 21.1 | 18.18 |
| AT3G08810.1 | Thale cress | nucleus | 24.89 | 17.2 |
| CDY00653 | Canola | cytosol | 22.36 | 16.01 |
| CDY29974 | Canola | plasma membrane | 21.94 | 15.76 |
| CDY09006 | Canola | nucleus | 20.25 | 15.74 |
| CDY66883 | Canola | extracellular | 13.92 | 15.71 |
| CDY53173 | Canola | nucleus, plastid | 24.47 | 15.63 |
| CDY68916 | Canola | nucleus | 19.83 | 15.36 |
| CDX91543 | Canola | plastid | 21.94 | 15.16 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 21.52 | 15.09 |
| AT5G51250.1 | Thale cress | cytosol | 23.21 | 14.95 |
| CDY41983 | Canola | cytosol | 16.03 | 14.9 |
| CDY27975 | Canola | nucleus, plastid | 20.68 | 14.76 |
| CDY51548 | Canola | plastid | 21.1 | 14.75 |
| CDY53174 | Canola | cytosol | 19.83 | 14.55 |
| CDY07711 | Canola | extracellular | 21.52 | 14.49 |
| CDY57171 | Canola | cytosol | 19.83 | 14.33 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 23.21 | 14.1 |
| CDY01110 | Canola | cytosol | 19.83 | 13.31 |
| CDY42631 | Canola | nucleus | 16.03 | 13.24 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 18.99 | 13.12 |
| CDY02008 | Canola | cytosol | 20.25 | 13.01 |
| CDY62432 | Canola | golgi | 23.63 | 12.81 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 19.41 | 12.47 |
| CDX86750 | Canola | cytosol | 5.91 | 12.39 |
| CDY63148 | Canola | cytosol | 17.3 | 12.39 |
| CDX72460 | Canola | extracellular | 20.68 | 12.37 |
| CDY15927 | Canola | cytosol | 20.25 | 12.31 |
| CDX99633 | Canola | mitochondrion | 20.25 | 12.24 |
| CDY44215 | Canola | plasma membrane | 14.77 | 12.24 |
| CDY41986 | Canola | cytosol | 19.83 | 11.41 |
| CDX75197 | Canola | cytosol | 17.72 | 11.35 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 19.83 | 11.27 |
| CDY41984 | Canola | cytosol | 18.14 | 11.23 |
| CDX98384 | Canola | plastid | 14.77 | 11.08 |
| CDY42632 | Canola | cytosol | 16.88 | 10.44 |
| CDY19889 | Canola | cytosol | 14.77 | 10.0 |
| CDX72687 | Canola | cytosol | 13.5 | 9.55 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 3.8 | 8.49 |
| CDY49285 | Canola | golgi, plasma membrane | 20.68 | 8.38 |
| CDY13276 | Canola | cytosol | 12.24 | 7.92 |
| CDY41987 | Canola | plastid | 17.72 | 5.87 |
| CDY42635 | Canola | nucleus | 17.72 | 5.61 |
| CDY12136 | Canola | cytosol | 1.27 | 3.61 |
| CDY35547 | Canola | cytosol | 3.38 | 3.17 |
Protein Annotations
| EnsemblPlants:CDX81183 | EnsemblPlantsGene:GSBRNA2T00134641001 | Gene3D:2.40.30.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EF1A/Init_IF2_C | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 |
| ProteinID:CDX81183 | ProteinID:CDX81183.1 | SUPFAM:SSF117281 | SUPFAM:SSF50447 | SUPFAM:SSF50465 | UniParc:UPI0004EDDB05 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g04370D
Coordinates
chrLK031823:-:2082586..2085532
Molecular Weight (calculated)
26927.6 Da
IEP (calculated)
9.192
GRAVY (calculated)
-0.331
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGRGMRELM YSEAYCVIGN VLYSAKEGVF KWYDTDRRTW RDLQGLVGLP NITRRREFIR LGDYGGKMVV FWVHVIWTYY KKIWCAEISL ERRPDTSEIW
101: GKVEWFDELR KININFQVEK VSACGKLESG AVRSGSKIMV MPSGEQELCG LSGLHHCKAG DNVAIALQGI DANQLEFHVH HAKEAATVVK HAAMLDPKTG
201: KPTKKSPRCL TAKQSAMLED TVSPDFTKFG LGHRFDR
101: GKVEWFDELR KININFQVEK VSACGKLESG AVRSGSKIMV MPSGEQELCG LSGLHHCKAG DNVAIALQGI DANQLEFHVH HAKEAATVVK HAAMLDPKTG
201: KPTKKSPRCL TAKQSAMLED TVSPDFTKFG LGHRFDR
001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEAAAE PKEEIAKTQG LWRCAICTYD NVETMFVCDI CGVLRHPVAG NQSINKNTAP FKFDAPSPDD
101: LVSNGLTSSK TGPKGSGDAS MRQKEKQDSV EQKPLKKGGD SSETSSRGRH DKLDDKGGAG GIKSGKSLPK AKADMSNETS SSSKYMETSE SLTGTMNKMS
201: LIGETENSSD IKIRGPKSQS KHKPEEWMLL DKESDALSQL NLAIVGHVDS GKSTLSGRLL HLLGRISQKQ MHKYEKEAKL QGKGSFAYAW ALDESAEERE
301: RGITMTVAVA YFNSKRHHVV LLDSPGHKDF VPNMIAGATQ ADAAILVIDA SVGAFEAGFD NLKGQTREHA RVLRGFGVEQ VIVAINKMDI VGYSKERFDL
401: IKQHVGSFLQ SCRFKDSSLT WIPLSAMENQ NLVAAPSDNR LSSWYQGPCL LDAVDSVKSP DRDVSKPLLM PICDAVRSTS QGQVSACGKL EAGAVRPGSK
501: VMVMPSGDQG TIRSLERDSQ ACTIARAGDN VALALQGIDA NQVMAGDVLC HPDFPVSVAT HLELMVLVLE GATPILLGSQ LEFHVHHAKE AATVVKLVAM
601: LDPKTGQPTK KSPRCLTAKQ SAMLEVSLQN PVCVETFSES RALGRVFLRS SGRTVAMGKV TRIIQDS
101: LVSNGLTSSK TGPKGSGDAS MRQKEKQDSV EQKPLKKGGD SSETSSRGRH DKLDDKGGAG GIKSGKSLPK AKADMSNETS SSSKYMETSE SLTGTMNKMS
201: LIGETENSSD IKIRGPKSQS KHKPEEWMLL DKESDALSQL NLAIVGHVDS GKSTLSGRLL HLLGRISQKQ MHKYEKEAKL QGKGSFAYAW ALDESAEERE
301: RGITMTVAVA YFNSKRHHVV LLDSPGHKDF VPNMIAGATQ ADAAILVIDA SVGAFEAGFD NLKGQTREHA RVLRGFGVEQ VIVAINKMDI VGYSKERFDL
401: IKQHVGSFLQ SCRFKDSSLT WIPLSAMENQ NLVAAPSDNR LSSWYQGPCL LDAVDSVKSP DRDVSKPLLM PICDAVRSTS QGQVSACGKL EAGAVRPGSK
501: VMVMPSGDQG TIRSLERDSQ ACTIARAGDN VALALQGIDA NQVMAGDVLC HPDFPVSVAT HLELMVLVLE GATPILLGSQ LEFHVHHAKE AATVVKLVAM
601: LDPKTGQPTK KSPRCLTAKQ SAMLEVSLQN PVCVETFSES RALGRVFLRS SGRTVAMGKV TRIIQDS
Arabidopsis Description
Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.