CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72460	Canola	extracellular	51.79	76.52
Bra017634.1-P	Field mustard	extracellular	23.76	65.57
CDY49284	Canola	extracellular, plasma membrane, vacuole	40.0	63.41
CDX84184	Canola	cytosol, nucleus, vacuole	7.18	39.62
CDY41985	Canola	plastid	17.44	38.35
CDX75197	Canola	cytosol	23.76	37.57
CDY16283	Canola	cytosol	9.23	36.99
CDX72687	Canola	cytosol	21.03	36.72
CDY42633	Canola	plastid	17.09	36.36
CDX86750	Canola	cytosol	7.01	36.28
CDY53174	Canola	cytosol	19.66	35.6
CDX78384	Canola	cytosol	8.72	35.42
CDY63148	Canola	cytosol	19.83	35.05
CDY68916	Canola	nucleus	18.12	34.64
CDY13275	Canola	mitochondrion	12.31	34.62
CDY01110	Canola	cytosol	20.85	34.56
CDY16374	Canola	cytosol, nucleus, peroxisome	19.83	34.32
CDX91543	Canola	plastid	20.0	34.11
CDY09006	Canola	nucleus	17.78	34.1
CDY12136	Canola	cytosol	4.79	33.73
CDY53173	Canola	nucleus, plastid	20.68	32.61
CDY41983	Canola	cytosol	14.19	32.55
CDY35547	Canola	cytosol	13.85	32.14
CDY42631	Canola	nucleus	15.73	32.06
CDY19889	Canola	cytosol	19.15	32.0
CDY02008	Canola	cytosol	20.17	31.98
CDY00653	Canola	cytosol	17.95	31.72
CDY57171	Canola	cytosol	17.78	31.71
CDY41984	Canola	cytosol	20.51	31.33
CDY29974	Canola	plasma membrane	17.61	31.21
CDY42632	Canola	cytosol	20.17	30.81
CDY42634	Canola	cytosol, nucleus, plastid	21.54	30.22
CDY51548	Canola	plastid	17.44	30.09
CDY15927	Canola	cytosol	19.83	29.74
CDX99633	Canola	mitochondrion	19.83	29.59
CDY07711	Canola	extracellular	17.78	29.55
CDY29938	Canola	cytosol, peroxisome, plasma membrane	17.27	29.45
CDX98384	Canola	plastid	15.9	29.43
CDY41986	Canola	cytosol	20.68	29.37
CDY51549	Canola	plastid	8.55	27.62
CDY44215	Canola	plasma membrane	13.5	27.62
CDY66883	Canola	extracellular	9.91	27.62
CDY36006	Canola	cytosol	9.91	26.24
CDY62432	Canola	golgi	18.46	24.71
CDY27975	Canola	nucleus, plastid	14.02	24.7
CDY13276	Canola	cytosol	13.5	21.58
CDX81183	Canola	cytosol	8.38	20.68
CDY41987	Canola	plastid	18.63	15.24
CDY42635	Canola	nucleus	18.8	14.71

Protein Annotations

EnsemblPlants:CDY49285	EnsemblPlantsGene:GSBRNA2T00092700001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	PFAM:PF00646	PFAM:PF01344	ProteinID:CDY49285	ProteinID:CDY49285.1	SEG:seg
SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0004EF444D	UniProt:A0A078IEI9	MapMan:35.1	:

Description

BnaA03g50980DBnaA03g50980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEI9]

Coordinates

chrLK032822:+:88653..97575

Molecular Weight (calculated)

67579.6 Da

IEP (calculated)

8.185

GRAVY (calculated)

-0.303

Length

585 amino acids

Sequence
(BLAST)

001: MSSTTKASNT AMNVEVPSVL KLLMLPEELI LSCLVRVPRL YYPTLTLVSK SIRSLINSPE LFPIPSLDSP PSAIIDGVSS SSVFVMDTHY HTWCKAPRGW
101: GKLDYTNWME VFDTKTRTWE FMPSPGSESF DYENVALEGS IYVRSNERGE TFKLNKGRWR AADLALTRGW SYNWKRLEWR EVKRLKGRLP MSSKNDHYRL
201: ADYGGNLVFL WEEHVHTKNV QNTTLVWCAE ISFERRQRTE ICGTIEWCDV VFTYTKQEHT LVHFIPEPLA NRDNKLVPIP SLDSPPSAMS VVAAVGSDIY
301: ANGGSIDGFS LSSVFVMDTH YHTWCKAPSM HVARVSPSAS VLDGKIYVVG GSKNLDYTNW MEVYDTKTQT WEFVPSPGKD IDGRFGYKSA SLEGSVYVMD
401: RAKYETFKLN KGRWRVADQK LTTGWSLDFV QFYYCVTENV LYYYSSIDLC WYDFIDKLWR GVKGLEGRLP WYRRFRNTYH HRLADYGGKL VFLWKEYVHT
501: ENVQNTTLVW CAEISLERLH RSEIYGTVEW CDVVFTYTTQ VDQENTTFVL MHVIPNTLKT SKILLLLSSL KHYQNCKKAK ITLLP

Best Arabidopsis Sequence Match ( AT3G43710.1 )
(BLAST)

001: METTPKRSKT LLMSNGEERR SMTFGIEMLP DDLVLSCLAR VPRMYYPILS LVSKRFRSFL TSTELYQTRN LLGSTESFLF VCLRIVNDSN PLRLFTLCRR
101: PNSLTKVMVP ILSPDSIPKF LPDVVLVGSN IYVIGGLINN NASHKVMVMD CRSHTWREAQ GTCVARVSPS ACVLDGKIYV AGGCKNLDAT MWMEVFDTKT
201: ESWEFVSSPG EEICRDLTSC ESIGYDGNVY VESMKTYGLY ELHKGRWREG QYSMSRGGSL SSQCVIDNVL YRSWSYMVEW YDSENKLWNS LKGLEKLFIV
301: TNQYVPTKCV NYGGKLAVFW LEKVYAKHLH QETKIWCAVI TIERRKKEEI WGTREWFDLV FTTNEEMVDL THVFAATL

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g43710 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2B5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.