CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77280
CDX93698
CDX93699
CDX96963
CDY14922
CDY16470
CDY40610
CDY40611

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39550.1	CDX96963	AT2G03170.1	14749489
AT4G39550.1	CDY14922	AT2G03170.1	14749489
AT4G39550.1	CDX77280	AT3G60010.1	14749489
AT4G39550.1	CDX93698	AT3G60010.1	14749489
AT4G39550.1	CDX93699	AT3G60010.1	14749489
AT4G39550.1	CDY16470	AT3G60010.1	14749489
AT4G39550.1	CDY40610	AT3G60010.1	14749489
AT4G39550.1	CDY40611	AT3G60010.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033628.1-P	Field mustard	nucleus	85.44	81.07
CDY42633	Canola	plastid	49.87	67.27
CDY41983	Canola	cytosol	45.28	65.88
CDY41985	Canola	plastid	46.09	64.29
AT4G39550.1	Thale cress	nucleus	60.11	56.89
CDY16374	Canola	cytosol, nucleus, peroxisome	46.36	50.89
CDY42631	Canola	nucleus	39.08	50.52
CDX91543	Canola	plastid	46.09	49.85
CDY68916	Canola	nucleus	40.7	49.35
CDY09006	Canola	nucleus	40.16	48.85
CDX86750	Canola	cytosol	14.56	47.79
CDX72687	Canola	cytosol	42.05	46.57
CDY53174	Canola	cytosol	40.43	46.44
CDY12136	Canola	cytosol	10.24	45.78
CDX84184	Canola	cytosol, nucleus, vacuole	12.94	45.28
CDY00653	Canola	cytosol	40.16	45.02
CDY63148	Canola	cytosol	39.62	44.41
CDY01110	Canola	cytosol	41.78	43.91
CDX78384	Canola	cytosol	16.44	42.36
CDY15927	Canola	cytosol	42.86	40.77
CDY16283	Canola	cytosol	15.9	40.41
CDX99633	Canola	mitochondrion	42.59	40.31
CDY51548	Canola	plastid	35.31	38.64
CDY29938	Canola	cytosol, peroxisome, plasma membrane	35.58	38.48
CDX75197	Canola	cytosol	37.74	37.84
CDY57171	Canola	cytosol	33.15	37.5
CDY41984	Canola	cytosol	38.27	37.08
CDY42632	Canola	cytosol	38.27	37.08
CDX72460	Canola	extracellular	39.35	36.87
CDY35547	Canola	cytosol	24.8	36.51
CDY02008	Canola	cytosol	36.12	36.31
CDY07711	Canola	extracellular	34.23	36.08
CDY19889	Canola	cytosol	33.42	35.43
CDY13275	Canola	mitochondrion	19.68	35.1
CDY29974	Canola	plasma membrane	30.19	33.94
CDY49284	Canola	extracellular, plasma membrane, vacuole	33.69	33.88
CDY41986	Canola	cytosol	37.47	33.74
CDY42634	Canola	cytosol, nucleus, plastid	37.74	33.57
CDY51549	Canola	plastid	16.17	33.15
CDX98384	Canola	plastid	28.03	32.91
CDY27975	Canola	nucleus, plastid	28.84	32.23
CDY62432	Canola	golgi	36.93	31.35
CDY36006	Canola	cytosol	18.33	30.77
CDY66883	Canola	extracellular	15.09	26.67
CDY44215	Canola	plasma membrane	20.49	26.57
CDX81183	Canola	cytosol	15.63	24.47
CDY13276	Canola	cytosol	21.56	21.86
CDY49285	Canola	golgi, plasma membrane	32.61	20.68
CDY41987	Canola	plastid	35.58	18.46
CDY42635	Canola	nucleus	35.04	17.38

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078IW48	EnsemblPlants:CDY53173	ProteinID:CDY53173	ProteinID:CDY53173.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00008722001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE18E6
SEG:seg	:	:	:	:	:

Description

BnaA06g40520DBnaA06g40520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW48]

Coordinates

chrLK033173:+:22070..23272

Molecular Weight (calculated)

41867.5 Da

IEP (calculated)

10.092

GRAVY (calculated)

-0.456

Length

371 amino acids

Sequence
(BLAST)

001: MSSPEEKKKR KRMSTTKKKK LLQSLVLPPT PQSTPNPSLP DDLLLSCFSR LSRLYYPTLS LVSKTFQSLL ASPELYKTRS SLGRTESCLY VCLKSHPDPI
101: PRWYTLCRKP DKTLTTNEDT MKLKKKSSGY VLAKIPTSHS GPVHWSGLAT VGSDIYNIGG PINDDKDPSS RVLIMDSRSN RWREGPSMLV KRRYPVTSVL
201: DGKIYVAGGC KDCSSSSDKS AGFDGKVYIF GGGNGLAYKP REGRWERVGW EMDTSWPWYS YAVIDNVLYQ YNGGFKWYDT KVGLWRGLKG VKGLPKFPRY
301: IARLADYGGK MAVFWERVLA STGFKDKMIL CAVIALERRN SEEIWGKVEW HDTLLTVSKS CRVDYALATT V

Best Arabidopsis Sequence Match ( AT4G39550.1 )
(BLAST)

001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV

Arabidopsis Description

F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.