CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41986	Canola	cytosol	91.37	92.48
CDY41984	Canola	cytosol	59.71	65.01
CDY42632	Canola	cytosol	58.99	64.23
CDX86750	Canola	cytosol	13.67	50.44
AT4G39590.1	Thale cress	plastid	45.8	47.51
CDY12136	Canola	cytosol	9.35	46.99
CDY53174	Canola	cytosol	35.97	46.44
CDX84184	Canola	cytosol, nucleus, vacuole	11.51	45.28
CDX72687	Canola	cytosol	36.21	45.07
CDY63148	Canola	cytosol	35.73	45.02
CDY41985	Canola	plastid	28.54	44.74
CDY42633	Canola	plastid	28.54	43.27
CDY01110	Canola	cytosol	36.45	43.06
CDY41983	Canola	cytosol	25.42	41.57
CDY68916	Canola	nucleus	29.5	40.2
CDY09006	Canola	nucleus	29.02	39.67
CDX78384	Canola	cytosol	13.67	39.58
CDY13275	Canola	mitochondrion	18.94	37.98
CDY16374	Canola	cytosol, nucleus, peroxisome	30.7	37.87
CDY53173	Canola	nucleus, plastid	33.57	37.74
CDY16283	Canola	cytosol	13.19	37.67
CDX99633	Canola	mitochondrion	35.01	37.24
CDY15927	Canola	cytosol	34.77	37.18
CDX75197	Canola	cytosol	32.85	37.03
CDY42631	Canola	nucleus	25.42	36.93
CDY00653	Canola	cytosol	29.26	36.86
CDX91543	Canola	plastid	30.22	36.73
CDY51548	Canola	plastid	29.5	36.28
CDY35547	Canola	cytosol	21.58	35.71
CDY02008	Canola	cytosol	30.94	34.96
CDY29974	Canola	plasma membrane	27.58	34.85
CDY49284	Canola	extracellular, plasma membrane, vacuole	30.7	34.69
CDX72460	Canola	extracellular	32.85	34.6
CDY57171	Canola	cytosol	26.86	34.15
CDY29938	Canola	cytosol, peroxisome, plasma membrane	27.82	33.82
CDY19889	Canola	cytosol	28.06	33.43
CDY07711	Canola	extracellular	27.82	32.95
CDX98384	Canola	plastid	24.7	32.59
CDY36006	Canola	cytosol	16.55	31.22
CDY27975	Canola	nucleus, plastid	24.7	31.02
CDY51549	Canola	plastid	12.71	29.28
CDY62432	Canola	golgi	30.46	29.06
CDY66883	Canola	extracellular	14.39	28.57
CDY44215	Canola	plasma membrane	19.42	28.32
CDY13276	Canola	cytosol	21.58	24.59
CDY49285	Canola	golgi, plasma membrane	30.22	21.54
CDY41987	Canola	plastid	35.25	20.56
CDX81183	Canola	cytosol	11.27	19.83
CDY42635	Canola	nucleus	34.29	19.12

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078HZ72	EnsemblPlants:CDY42634	ProteinID:CDY42634	ProteinID:CDY42634.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00075141001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0004EE1131	SEG:seg	:	:	:

Description

BnaC01g00460DBnaC01g00460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ72]

Coordinates

chrLK032530:-:168744..169997

Molecular Weight (calculated)

46945.4 Da

IEP (calculated)

5.195

GRAVY (calculated)

-0.238

Length

417 amino acids

Sequence
(BLAST)

001: MSTRSSAAVN GDKPPGKKMT KQSPEISILS LPYDLILNII ARVSRMYYPT LSLVSKMLRS VVASPELYQT RSRLNLTESC LYLCLRYYRD PPLDPNPHWF
101: ALCMKPNRTL TDRLFIPVTS PDVRHERSTG LTSKDVSIVA AGSNIYKMGG YTPSSSEVSV LDCRFNTWHS APMMRVKRSS PAASLVDGKI YVAGGCEDVN
201: SENWVEVFDP KTQTWGSVTN PGAEIRPSGA ELESFGIEGK LYLFGHNRKY VIYDPKEARW NPMIELGMGM GMDMDVVMGM GMDMYEAMDM EMDMNGVASA
301: VSYFHCVIGD VLFLWNEREF RWYDFKASSW KKLNGVEDLP DFDGDCKMVD VGGKMAVLWK VFGRGDGHGE ERSIWCAEIA LERRGDDMWG KVEWFDVVLT
401: THEQCGLFDA DILSATV

Best Arabidopsis Sequence Match ( AT4G39590.1 )
(BLAST)

001: MFPMSSTSRS SAANNRKDPP RKKNKETPSP VTREPTSIDS LPNDLLLNCF ARVSRMYYPA LSRVSKRFRS IVTSPEIYNT RSLLNRTEKC LYLCLRFPFD
101: NNTHWFTLYQ NPNRTVSDKV FLQIPSPQYP LTLSSNLVAV GSNIYRIGGT VGDDSCPLGF DREPSSKVSI LDCRSHTWRD GPRMRLNRRS STTSVVDGKI
201: YVTGGTEDTD NPSHWIEVFD PKTQSWGTVT NPHIVKVWEE VCYRRAVKSI GHDGKLYLSG DKYVVYDPDE GKWNSVEEHW LIGYAIGSSN CVVDNILFYW
301: DQGVFKWYDS KVSSWKQLKG LEGLPDDFSQ REYCKLVDLG GKMAVLWDKW EYSGVCMIFC AEISLEKRDG DEIWGKVEWF DTVLEVGASC SLKSADALSA
401: SV

Arabidopsis Description

F-box/kelch-repeat protein At4g39590 [Source:UniProtKB/Swiss-Prot;Acc:Q1PE10]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.