CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022509.1-P	Field mustard	cytosol	95.27	94.99
CDX91543	Canola	plastid	95.56	94.17
CDX86750	Canola	cytosol	16.27	48.67
CDY41983	Canola	cytosol	36.09	47.84
CDY41985	Canola	plastid	37.28	47.37
CDX84184	Canola	cytosol, nucleus, vacuole	14.79	47.17
CDY53173	Canola	nucleus, plastid	50.89	46.36
CDY42633	Canola	plastid	37.28	45.82
CDY12136	Canola	cytosol	10.06	40.96
CDY53174	Canola	cytosol	39.05	40.87
CDY09006	Canola	nucleus	36.09	40.0
CDY68916	Canola	nucleus	36.09	39.87
CDY00653	Canola	cytosol	37.57	38.37
CDY16283	Canola	cytosol	16.57	38.36
CDY51549	Canola	plastid	20.41	38.12
CDY15927	Canola	cytosol	43.49	37.69
CDX78384	Canola	cytosol	15.98	37.5
CDX99633	Canola	mitochondrion	43.49	37.5
CDX72687	Canola	cytosol	36.69	37.01
CDY57171	Canola	cytosol	35.5	36.59
CDY42631	Canola	nucleus	29.88	35.19
CDY63148	Canola	cytosol	33.73	34.44
CDY41984	Canola	cytosol	38.76	34.2
CDY51548	Canola	plastid	34.02	33.92
CDX72460	Canola	extracellular	39.65	33.84
CDY13275	Canola	mitochondrion	20.71	33.65
CDY01110	Canola	cytosol	34.91	33.43
CDX75197	Canola	cytosol	36.39	33.24
CDY29938	Canola	cytosol, peroxisome, plasma membrane	33.73	33.24
CDY02008	Canola	cytosol	36.09	33.06
CDY42632	Canola	cytosol	37.28	32.9
CDY49284	Canola	extracellular, plasma membrane, vacuole	35.5	32.52
CDY07711	Canola	extracellular	33.14	31.82
CDY29974	Canola	plasma membrane	30.77	31.52
CDY41986	Canola	cytosol	37.87	31.07
CDY66883	Canola	extracellular	19.23	30.95
CDY42634	Canola	cytosol, nucleus, plastid	37.87	30.7
CDY19889	Canola	cytosol	31.07	30.0
CDY35547	Canola	cytosol	22.19	29.76
CDY36006	Canola	cytosol	18.93	28.96
CDY62432	Canola	golgi	35.5	27.46
CDY27975	Canola	nucleus, plastid	26.33	26.81
CDX98384	Canola	plastid	24.85	26.58
CDY44215	Canola	plasma membrane	20.12	23.78
CDX81183	Canola	cytosol	15.09	21.52
CDY49285	Canola	golgi, plasma membrane	34.32	19.83
CDY13276	Canola	cytosol	20.12	18.58
CDY41987	Canola	plastid	32.25	15.24
CDY42635	Canola	nucleus	32.25	14.57

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078FTV5	EnsemblPlants:CDY16374	ProteinID:CDY16374	ProteinID:CDY16374.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00090906001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE7C37	SEG:seg

Description

BnaA02g11780DBnaA02g11780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTV5]

Coordinates

chrLK032063:-:225956..226972

Molecular Weight (calculated)

37916.2 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.332

Length

338 amino acids

Sequence
(BLAST)

001: MTSPDRKGKA TTEQSSPLPS LPDDLLLTCF ARVSTLHYPT LTLVSKRFQS LIASPELYKI RSTLGRTESC LYVCFGSDHD PNPRWFTLCL KPDRNVINGS
101: SGNVLVPTSV PHSAPAHWSG LISGPSNDIY NIGGPLEDAP SSSEPGNMWV DPMVDVLDRK IYVTRGCNPN TRTWDPEGST PHAFVSLVVR KKVYMFGSSG
201: DSAYKPKDGQ WERFWGWKPS LGWFSCCVVE KVLYRYRSEE FKWYDTKAGH WRKLKGLKGL PKFVSYGFQL VDYGGKLAVV WAELVPNGGD KKKVVWCAVI
301: TLERPKSGDE IWGEIEWCDV VCTVPKSYQL EYALDATL

Best Arabidopsis Sequence Match ( AT4G39550.1 )
(BLAST)

001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV

Arabidopsis Description

F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.