Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011856.1-P | Field mustard | nucleus | 66.27 | 88.48 |
| CDX86750 | Canola | cytosol | 21.96 | 49.56 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 20.39 | 49.06 |
| CDY12136 | Canola | cytosol | 15.69 | 48.19 |
| CDY42633 | Canola | plastid | 50.2 | 46.55 |
| CDY53173 | Canola | nucleus, plastid | 65.88 | 45.28 |
| CDY41985 | Canola | plastid | 46.67 | 44.74 |
| CDY68916 | Canola | nucleus | 48.63 | 40.52 |
| CDY09006 | Canola | nucleus | 47.06 | 39.34 |
| AT4G39550.1 | Thale cress | nucleus | 60.0 | 39.03 |
| CDY42631 | Canola | nucleus | 41.96 | 37.28 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 47.84 | 36.09 |
| CDY01110 | Canola | cytosol | 49.41 | 35.69 |
| CDY63148 | Canola | cytosol | 46.27 | 35.65 |
| CDX91543 | Canola | plastid | 47.84 | 35.57 |
| CDY00653 | Canola | cytosol | 43.53 | 33.53 |
| CDY53174 | Canola | cytosol | 40.0 | 31.58 |
| CDY51548 | Canola | plastid | 41.96 | 31.56 |
| CDY51549 | Canola | plastid | 22.35 | 31.49 |
| CDY57171 | Canola | cytosol | 40.39 | 31.4 |
| CDX99633 | Canola | mitochondrion | 47.06 | 30.61 |
| CDY15927 | Canola | cytosol | 46.67 | 30.51 |
| CDY07711 | Canola | extracellular | 41.18 | 29.83 |
| CDX72687 | Canola | cytosol | 38.82 | 29.55 |
| CDY02008 | Canola | cytosol | 42.75 | 29.54 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 39.22 | 29.15 |
| CDY41984 | Canola | cytosol | 42.75 | 28.46 |
| CDY42632 | Canola | cytosol | 41.96 | 27.94 |
| CDY19889 | Canola | cytosol | 37.65 | 27.43 |
| CDX75197 | Canola | cytosol | 38.82 | 26.76 |
| CDY62432 | Canola | golgi | 45.1 | 26.32 |
| CDY66883 | Canola | extracellular | 21.18 | 25.71 |
| CDX72460 | Canola | extracellular | 39.61 | 25.51 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 41.57 | 25.42 |
| CDY41986 | Canola | cytosol | 40.39 | 25.0 |
| CDY35547 | Canola | cytosol | 24.31 | 24.6 |
| CDY29974 | Canola | plasma membrane | 31.76 | 24.55 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 34.9 | 24.12 |
| CDX78384 | Canola | cytosol | 13.33 | 23.61 |
| CDY27975 | Canola | nucleus, plastid | 30.2 | 23.19 |
| CDY44215 | Canola | plasma membrane | 25.49 | 22.73 |
| CDY16283 | Canola | cytosol | 12.55 | 21.92 |
| CDX98384 | Canola | plastid | 26.67 | 21.52 |
| CDY13275 | Canola | mitochondrion | 15.29 | 18.75 |
| CDY36006 | Canola | cytosol | 15.69 | 18.1 |
| CDX81183 | Canola | cytosol | 14.9 | 16.03 |
| CDY41987 | Canola | plastid | 43.92 | 15.66 |
| CDY13276 | Canola | cytosol | 21.57 | 15.03 |
| CDY49285 | Canola | golgi, plasma membrane | 32.55 | 14.19 |
| CDY42635 | Canola | nucleus | 41.57 | 14.17 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A078HZ35 | EnsemblPlants:CDY41983 | ProteinID:CDY41983 | ProteinID:CDY41983.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00073979001 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PFscan:PS50181 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EDCCBE |
| SEG:seg | : | : | : | : | : |
Description
BnaA01g05550DBnaA01g05550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ35]
Coordinates
chrLK032511:-:183834..184893
Molecular Weight (calculated)
28273.1 Da
IEP (calculated)
9.104
GRAVY (calculated)
-0.282
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPERKRKK TKQSLVLEPT PESTPITSLP DDLVVSCLAR VSRLQYPTLS LVSKSFRSLL ASPHLYETRS SLGRTESCLY VCIRFPDETI PRWFTLCQKP
101: KKKNKRTKKA SGYVLAKLPT PPSRSAHWSG LVAVGSDIYN IGGPIDEADE PSSSVSILDC RSNTWREGPR QSLKGVKGLD KIPPCTVTLA DFGGKMAVLW
201: DRDVASTGGD KMIWCAVIAL ERRNDEDIWG KVEWSDTVLE VPESCIIIRV LAATL
101: KKKNKRTKKA SGYVLAKLPT PPSRSAHWSG LVAVGSDIYN IGGPIDEADE PSSSVSILDC RSNTWREGPR QSLKGVKGLD KIPPCTVTLA DFGGKMAVLW
201: DRDVASTGGD KMIWCAVIAL ERRNDEDIWG KVEWSDTVLE VPESCIIIRV LAATL
001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV
Arabidopsis Description
F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.