Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57171 | Canola | cytosol | 62.54 | 64.63 |
| CDY51549 | Canola | plastid | 31.56 | 59.12 |
| CDY02008 | Canola | cytosol | 63.13 | 57.99 |
| CDX86750 | Canola | cytosol | 17.11 | 51.33 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 14.45 | 46.23 |
| CDY12136 | Canola | cytosol | 11.21 | 45.78 |
| AT4G39600.2 | Thale cress | plastid | 50.44 | 45.24 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 48.97 | 44.62 |
| CDY66883 | Canola | extracellular | 27.43 | 44.29 |
| AT5G48980.1 | Thale cress | nucleus | 50.15 | 42.61 |
| CDY41983 | Canola | cytosol | 31.56 | 41.96 |
| CDY15927 | Canola | cytosol | 48.08 | 41.79 |
| CDX99633 | Canola | mitochondrion | 46.9 | 40.56 |
| AT2G20380.1 | Thale cress | cytosol | 38.35 | 37.36 |
| CDY41985 | Canola | plastid | 29.2 | 37.22 |
| CDY53174 | Canola | cytosol | 35.4 | 37.15 |
| CDY42633 | Canola | plastid | 30.09 | 37.09 |
| CDX78384 | Canola | cytosol | 15.34 | 36.11 |
| CDY53173 | Canola | nucleus, plastid | 38.64 | 35.31 |
| CDY68916 | Canola | nucleus | 31.56 | 34.97 |
| CDY09006 | Canola | nucleus | 30.97 | 34.43 |
| CDY00653 | Canola | cytosol | 33.33 | 34.14 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 33.92 | 34.02 |
| CDY01110 | Canola | cytosol | 34.51 | 33.14 |
| CDX91543 | Canola | plastid | 33.33 | 32.94 |
| CDY63148 | Canola | cytosol | 32.15 | 32.93 |
| CDX72687 | Canola | cytosol | 32.45 | 32.84 |
| CDY16283 | Canola | cytosol | 13.86 | 32.19 |
| CDY42632 | Canola | cytosol | 35.69 | 31.59 |
| CDY41984 | Canola | cytosol | 35.4 | 31.33 |
| CDX75197 | Canola | cytosol | 33.63 | 30.81 |
| CDX72460 | Canola | extracellular | 35.69 | 30.56 |
| CDY41986 | Canola | cytosol | 36.58 | 30.1 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 36.28 | 29.5 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 29.79 | 29.45 |
| CDY29974 | Canola | plasma membrane | 28.02 | 28.79 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 30.68 | 28.18 |
| CDY19889 | Canola | cytosol | 28.02 | 27.14 |
| CDY35547 | Canola | cytosol | 19.47 | 26.19 |
| CDY07711 | Canola | extracellular | 26.84 | 25.85 |
| CDY36006 | Canola | cytosol | 16.81 | 25.79 |
| CDY42631 | Canola | nucleus | 21.53 | 25.44 |
| CDY13275 | Canola | mitochondrion | 15.34 | 25.0 |
| CDY27975 | Canola | nucleus, plastid | 23.89 | 24.4 |
| CDX98384 | Canola | plastid | 21.83 | 23.42 |
| CDY62432 | Canola | golgi | 28.91 | 22.43 |
| CDX81183 | Canola | cytosol | 14.75 | 21.1 |
| CDY44215 | Canola | plasma membrane | 16.81 | 19.93 |
| CDY49285 | Canola | golgi, plasma membrane | 30.09 | 17.44 |
| CDY41987 | Canola | plastid | 32.45 | 15.38 |
| CDY42635 | Canola | nucleus | 33.63 | 15.24 |
| CDY13276 | Canola | cytosol | 16.22 | 15.03 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A078IR50 | EnsemblPlants:CDY51548 | ProteinID:CDY51548 | ProteinID:CDY51548.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00003726001 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EDF8E4 | SEG:seg |
Description
BnaC03g72940DBnaC03g72940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IR50]
Coordinates
chrLK033005:+:23977..25128
Molecular Weight (calculated)
38307.3 Da
IEP (calculated)
9.162
GRAVY (calculated)
-0.247
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTSIASGQ EPPSNKPPVI EPTLILQLPD DLVLSCLAHV SRLHYPILSL VSKTFRSFTS SLELYQTRYL LNRTEGCLYV CLQFPNEPNL RWFTLCRKPD
101: KTLNKKKKKK KNTTQSSSGN ILAQVQILNS PPVEWSDSDI VAVGHKLYAI NKEDDNPDSL NCVQVLDTKN QTWKAVPEDK RIFRDTDFEG KVYKNLDGAS
201: GKRSSLVLKL KDSTIDLVGS GTVCVIEKRF YCYLSTGVFL WSNSEIKSFG LKKVQGLEGL PKFGLYTNVK LVECGGKMVV FWDKYVPARG RYKEKMIWCA
301: EISLEMRSSE EVWGKVEWFD AVLTVPKSCK FVYAIAATV
101: KTLNKKKKKK KNTTQSSSGN ILAQVQILNS PPVEWSDSDI VAVGHKLYAI NKEDDNPDSL NCVQVLDTKN QTWKAVPEDK RIFRDTDFEG KVYKNLDGAS
201: GKRSSLVLKL KDSTIDLVGS GTVCVIEKRF YCYLSTGVFL WSNSEIKSFG LKKVQGLEGL PKFGLYTNVK LVECGGKMVV FWDKYVPARG RYKEKMIWCA
301: EISLEMRSSE EVWGKVEWFD AVLTVPKSCK FVYAIAATV
001: MSSSTASATT GMKGKKPSIE IATSNPSLPE DLVVSCLARV SRLYYPTLSL VSKSFRSLIA SPDLYKTRSL LGRTESCLYL CLRYSPEDNP RWFTLCRKPN
101: RRTLSKEKNE SSGNLLVPIP IINSPPLEWS SIVAVGSHLY AINGPIEDAP CSNVSFLDCR SHTWLEAPSM RVAHTNSQLD GKMYLAGSSE NVDSLNCIQV
201: FSTKTQTWKP VPFQKRIFGV GDLEGKIYTI CRTECGQGVT IKPKDLTCDV VGFCGEKDWS SVCMIGNIVY FYRPNGEFLW IYSGKGESAR RNLKGLEGLP
301: KFDDYASVKL VDYGGKLMVL WDTYVPESES KEKMIWCAEI SLQKKCNNEE IWGTVEWFDA VLTVPEDCKF VRAIAATV
101: RRTLSKEKNE SSGNLLVPIP IINSPPLEWS SIVAVGSHLY AINGPIEDAP CSNVSFLDCR SHTWLEAPSM RVAHTNSQLD GKMYLAGSSE NVDSLNCIQV
201: FSTKTQTWKP VPFQKRIFGV GDLEGKIYTI CRTECGQGVT IKPKDLTCDV VGFCGEKDWS SVCMIGNIVY FYRPNGEFLW IYSGKGESAR RNLKGLEGLP
301: KFDDYASVKL VDYGGKLMVL WDTYVPESES KEKMIWCAEI SLQKKCNNEE IWGTVEWFDA VLTVPEDCKF VRAIAATV
Arabidopsis Description
Galactose oxidase/kelch repeat superfamily protein [Source:TAIR;Acc:AT4G39600]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.