Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72687 | Canola | cytosol | 72.14 | 69.55 |
| AT4G39580.1 | Thale cress | cytosol | 72.14 | 62.13 |
| CDX86750 | Canola | cytosol | 17.03 | 48.67 |
| CDY12136 | Canola | cytosol | 12.07 | 46.99 |
| CDY42633 | Canola | plastid | 39.01 | 45.82 |
| CDY41985 | Canola | plastid | 36.84 | 44.74 |
| CDX84184 | Canola | cytosol, nucleus, vacuole | 13.93 | 42.45 |
| CDY53173 | Canola | nucleus, plastid | 46.44 | 40.43 |
| CDY41983 | Canola | cytosol | 31.58 | 40.0 |
| CDY63148 | Canola | cytosol | 40.87 | 39.88 |
| CDY01110 | Canola | cytosol | 43.03 | 39.38 |
| CDY16374 | Canola | cytosol, nucleus, peroxisome | 40.87 | 39.05 |
| CDX91543 | Canola | plastid | 40.87 | 38.48 |
| CDY13275 | Canola | mitochondrion | 23.84 | 37.02 |
| CDY16283 | Canola | cytosol | 16.72 | 36.99 |
| CDX78384 | Canola | cytosol | 16.41 | 36.81 |
| CDY57171 | Canola | cytosol | 37.15 | 36.59 |
| CDX99633 | Canola | mitochondrion | 44.27 | 36.48 |
| CDY15927 | Canola | cytosol | 43.96 | 36.41 |
| CDY41984 | Canola | cytosol | 43.03 | 36.29 |
| CDY68916 | Canola | nucleus | 34.37 | 36.27 |
| CDY42631 | Canola | nucleus | 32.2 | 36.24 |
| CDY42634 | Canola | cytosol, nucleus, plastid | 46.44 | 35.97 |
| CDY09006 | Canola | nucleus | 33.75 | 35.74 |
| CDX72460 | Canola | extracellular | 43.65 | 35.61 |
| CDY42632 | Canola | cytosol | 42.11 | 35.51 |
| CDY51548 | Canola | plastid | 37.15 | 35.4 |
| CDY02008 | Canola | cytosol | 40.25 | 35.23 |
| CDY41986 | Canola | cytosol | 43.96 | 34.47 |
| CDY00653 | Canola | cytosol | 34.98 | 34.14 |
| CDY49284 | Canola | extracellular, plasma membrane, vacuole | 37.15 | 32.52 |
| CDX75197 | Canola | cytosol | 37.15 | 32.43 |
| CDY35547 | Canola | cytosol | 24.15 | 30.95 |
| CDY66883 | Canola | extracellular | 20.12 | 30.95 |
| CDY29938 | Canola | cytosol, peroxisome, plasma membrane | 32.82 | 30.9 |
| CDY29974 | Canola | plasma membrane | 30.96 | 30.3 |
| CDY51549 | Canola | plastid | 16.72 | 29.83 |
| CDY36006 | Canola | cytosol | 20.12 | 29.41 |
| CDY07711 | Canola | extracellular | 31.89 | 29.26 |
| CDY19889 | Canola | cytosol | 31.58 | 29.14 |
| CDX98384 | Canola | plastid | 26.93 | 27.53 |
| CDY27975 | Canola | nucleus, plastid | 27.86 | 27.11 |
| CDY62432 | Canola | golgi | 33.44 | 24.71 |
| CDY44215 | Canola | plasma membrane | 20.12 | 22.73 |
| CDY13276 | Canola | cytosol | 24.46 | 21.58 |
| CDX81183 | Canola | cytosol | 14.55 | 19.83 |
| CDY49285 | Canola | golgi, plasma membrane | 35.6 | 19.66 |
| CDY41987 | Canola | plastid | 30.03 | 13.57 |
| CDY42635 | Canola | nucleus | 30.03 | 12.97 |
Protein Annotations
| EnsemblPlants:CDY53174 | EnsemblPlantsGene:GSBRNA2T00008723001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFAM:PF01344 | PFscan:PS50181 | ProteinID:CDY53174 | ProteinID:CDY53174.1 |
| SMART:SM00256 | SUPFAM:SSF117281 | UniParc:UPI0004EDB75C | UniProt:A0A078IUS7 | MapMan:35.1 | : |
Description
BnaA06g40530DBnaA06g40530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUS7]
Coordinates
chrLK033173:+:23754..24887
Molecular Weight (calculated)
37068.3 Da
IEP (calculated)
7.623
GRAVY (calculated)
-0.212
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNDEAPPHE QNKMVSPPTT TSLSLPNDIL LSFLSRVSRL YYPTFSLVSK SFRSLIASPE LYQTRSFLHR TESCLYVCLR SLTDSNLRWF TLCRVPDRKL
101: TNFSGPINDA PSSRVSFLDC RVLDGKIYVA GGCEDCDSLN CIEVFDPNTQ SWESVASHGR CERLAYKSVG IEGKFHLLGG ASHVAYNYRE GRWDSMGTEM
201: DMGRAWVSYC VIKNILLYYH ERDREFKWYD YKGRFWRKLM GLERLVKFLC YSRVNLADYG GKMAVLWDTF VPGSGSKNKM IWCAEVSLGS HEVYDICGEI
301: EWFDVVLRVS KSYELVHVIA ATV
101: TNFSGPINDA PSSRVSFLDC RVLDGKIYVA GGCEDCDSLN CIEVFDPNTQ SWESVASHGR CERLAYKSVG IEGKFHLLGG ASHVAYNYRE GRWDSMGTEM
201: DMGRAWVSYC VIKNILLYYH ERDREFKWYD YKGRFWRKLM GLERLVKFLC YSRVNLADYG GKMAVLWDTF VPGSGSKNKM IWCAEVSLGS HEVYDICGEI
301: EWFDVVLRVS KSYELVHVIA ATV
001: MNEEEAPSEQ KKTLSLVPSP TTNLFLPDDI LLSSLSRISR LYYPTFSLVS KSFRSLIASP ELYQTRSILG RTESCLYVSL RLLNDSNLRW YTLCRVPDRK
101: LTNFSGGHLL VPILSRYAPP AHWSSVVAVD YNIYAIGGPI NDAPSSSVSV LDCQCEKWRE APSMRVARNY PTATVLDGKI YVAGGCEDCT SLDCIEVFDP
201: KTQTWDSVAS PGTERCERLV YKSVGIEGKY HLFGGAGHVA YDPKEGRWDS VGMDMEMGRT WVSYCVINNI LFYYNDREFK WYDYKGRFWR KLMGLERLIK
301: FLCYSRVNLA AYGEKMAVLW DTFVPSSSKN KMIWCAEITI ERHDIYEICG KTEWFDVVLR VPKSYELVHV LAATV
101: LTNFSGGHLL VPILSRYAPP AHWSSVVAVD YNIYAIGGPI NDAPSSSVSV LDCQCEKWRE APSMRVARNY PTATVLDGKI YVAGGCEDCT SLDCIEVFDP
201: KTQTWDSVAS PGTERCERLV YKSVGIEGKY HLFGGAGHVA YDPKEGRWDS VGMDMEMGRT WVSYCVINNI LFYYNDREFK WYDYKGRFWR KLMGLERLIK
301: FLCYSRVNLA AYGEKMAVLW DTFVPSSSKN KMIWCAEITI ERHDIYEICG KTEWFDVVLR VPKSYELVHV LAATV
Arabidopsis Description
F-box/kelch-repeat protein At4g39580 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.