Factsheet for AT5G38680.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G51250.1	Thale cress	cytosol	55.18	53.53
CDY68916	Canola	nucleus	42.86	50.0
CDY09006	Canola	nucleus	42.58	49.84
AT5G38670.1	Thale cress	cytosol, plastid	40.62	49.83
CDY00653	Canola	cytosol	45.38	48.94
AT3G09750.1	Thale cress	mitochondrion	21.85	48.45
AT4G39560.1	Thale cress	plastid	35.85	48.12
Bra001343.1-P	Field mustard	nucleus	35.85	48.12
AT3G08810.1	Thale cress	nucleus	45.38	47.23
AT4G25710.1	Thale cress	cytosol	51.54	47.18
Bra023735.1-P	Field mustard	nucleus	49.02	46.79
AT2G03460.1	Thale cress	plastid	33.33	46.3
AT5G49000.2	Thale cress	nucleus	48.18	46.24
AT1G19930.1	Thale cress	cytosol	42.86	44.48
AT4G39550.1	Thale cress	nucleus	47.62	43.37
AT3G06570.1	Thale cress	cytosol, plastid	46.5	42.56
AT4G39570.1	Thale cress	nucleus, plastid	46.5	42.03
AT4G39600.2	Thale cress	plastid	44.26	41.8
AT4G05620.1	Thale cress	plastid	15.41	41.67
AT4G39580.1	Thale cress	cytosol	43.42	41.33
AT1G60570.1	Thale cress	cytosol	42.3	39.63
AT5G48990.1	Thale cress	cytosol, plastid	40.62	38.98
AT4G34170.1	Thale cress	cytosol	31.93	38.91
AT4G23580.1	Thale cress	cytosol	41.18	38.38
AT1G77880.1	Thale cress	cytosol	13.73	37.69
AT4G11770.1	Thale cress	cytosol	41.18	37.12
AT3G43710.1	Thale cress	cytosol	39.22	37.04
AT4G33900.1	Thale cress	cytosol	39.22	36.94
AT1G61540.1	Thale cress	cytosol	41.18	36.57
AT5G48980.1	Thale cress	nucleus	40.62	36.34
AT4G39590.1	Thale cress	plastid	40.34	35.82
AT4G11750.1	Thale cress	cytosol	38.66	35.75
AT4G39290.1	Thale cress	cytosol	34.73	33.97
AT2G20380.1	Thale cress	cytosol	31.93	32.76
AT4G11745.1	Thale cress	cytosol	25.21	31.69

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:833858	ProteinID:AED94349.1	ArrayExpress:AT5G38680	EnsemblPlantsGene:AT5G38680
RefSeq:AT5G38680	TAIR:AT5G38680	RefSeq:AT5G38680-TAIR-G	EnsemblPlants:AT5G38680.1	TAIR:AT5G38680.1	Unigene:At.55225
ProteinID:BAB10158.1	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	RefSeq:NP_198684.1	PFAM:PF00646
PFAM:PF01344	PFAM:PF07646	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	UniProt:Q9FFV4	SMART:SM00256
SUPFAM:SSF117281	UniParc:UPI00000A83A6	:	:	:	:

Description

Putative F-box/kelch-repeat protein At5g38680 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFV4]

Coordinates

chr5:+:15477324..15479040

Molecular Weight (calculated)

40504.4 Da

IEP (calculated)

8.870

GRAVY (calculated)

-0.248

Length

357 amino acids

Sequence
(BLAST)

001: MSSPEKFSPA PESNSNPSLP DALIISCIAR VSRLYYPILS FVSKSFRSLL ASPELYKERS LLNRTEGCLY VCLYLNPFES PSWFTLCLKP DQALSSETSN
101: KKKSSGYVLA TVSIPHPRLV QRSSLVAVGS NIYNIGRSIS PYSSVSIFDC RSHTWREAPS LPVELVEVSA GVLDGKIYVA GSCKDGDSLN LKNTFEVFDT
201: KTQVWDHVPI PYNETKHNIY SKSLCIDEKW YVGAKRKVVS YNPKKGIWDL VESEMCSYKS SYDYCEIENV LYSVEKTWRG TVFRWYDTEL GRWRKLEGLN
301: MPYSGTGDRG GKKMIWCAVI TLERRKNSGI WGNVEWFAHV LTVPKTFVFQ KFLAATV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.