Factsheet for AT4G39570.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G39550.1	Thale cress	nucleus	50.89	51.28
AT5G49000.2	Thale cress	nucleus	46.84	49.73
AT4G39560.1	Thale cress	plastid	33.16	49.25
AT5G51250.1	Thale cress	cytosol	45.06	48.37
AT1G19930.1	Thale cress	cytosol	41.27	47.38
AT5G38680.1	Thale cress	cytosol	42.03	46.5
AT4G39580.1	Thale cress	cytosol	44.05	46.4
AT4G05620.1	Thale cress	plastid	15.44	46.21
AT3G08810.1	Thale cress	nucleus	38.99	44.9
AT4G25710.1	Thale cress	cytosol	44.3	44.87
AT5G38670.1	Thale cress	cytosol, plastid	32.41	43.99
AT4G39600.2	Thale cress	plastid	41.77	43.65
AT3G09750.1	Thale cress	mitochondrion	17.47	42.86
AT3G06570.1	Thale cress	cytosol, plastid	41.52	42.05
AT4G34170.1	Thale cress	cytosol	30.89	41.64
AT1G77880.1	Thale cress	cytosol	13.67	41.54
AT1G60570.1	Thale cress	cytosol	40.0	41.47
AT4G11770.1	Thale cress	cytosol	41.52	41.41
AT5G48990.1	Thale cress	cytosol, plastid	37.97	40.32
AT1G61540.1	Thale cress	cytosol	40.51	39.8
AT2G03460.1	Thale cress	plastid	25.57	39.3
AT4G23580.1	Thale cress	cytosol	37.97	39.16
AT4G11750.1	Thale cress	cytosol	38.23	39.12
AT4G39590.1	Thale cress	plastid	39.75	39.05
AT5G48980.1	Thale cress	nucleus	38.23	37.84
AT3G43710.1	Thale cress	cytosol	35.44	37.04
AT4G33900.1	Thale cress	cytosol	34.18	35.62
AT4G39290.1	Thale cress	cytosol	32.66	35.34
AT2G20380.1	Thale cress	cytosol	30.13	34.2
AT4G11745.1	Thale cress	cytosol	23.04	32.04

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:830111	UniProt:A0A178UX04	ProteinID:AEE87089.1	ArrayExpress:AT4G39570
EnsemblPlantsGene:AT4G39570	RefSeq:AT4G39570	TAIR:AT4G39570	RefSeq:AT4G39570-TAIR-G	EnsemblPlants:AT4G39570.1	TAIR:AT4G39570.1
Unigene:At.31085	EMBL:BT011610	EMBL:BT012265	ProteinID:CAB44692.1	ProteinID:CAB80620.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	RefSeq:NP_195667.1	ProteinID:OAO97432.1	PFAM:PF00646	PFAM:PF01344
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	UniProt:Q9SVA1	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000009CFB9	SEG:seg	:

Description

F-box/kelch-repeat protein At4g39570 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA1]

Coordinates

chr4:-:18384000..18385548

Molecular Weight (calculated)

45026.2 Da

IEP (calculated)

8.932

GRAVY (calculated)

-0.320

Length

395 amino acids

Sequence
(BLAST)

001: MSSPERKRKR VTSTKNPSVK KKKKISPVPT PIPSLPDDLL VSIFARVSRL YYPILSLVSK SFRSLLRSPE LYETRSLLGR TESCLYLCLQ EGNPDPNPLW
101: FTLCMKPDRT LKNGKKKKKK KMSSGNLLIP IPVPNPPLEH WSGHASVGSD IYFFGGYMEE NVRSSRVVIL DCRSHTLREA PSLQMERSDP AASVIDGKIY
201: VAGGVDGDDA DSLYPIEVFD IKTQIWDHRP IPYWEKDWGA LSRSAYVDGK FYLTIGMKVM AYDLEESRWD FAGYQMGQSW FWSCNCVIEN VLYCYGDAFR
301: WFDTKLRLWK VMKVKGLPKL SRNVDVKIAD YGGKMAIFWD NPSPSASDTN KIIRCAVIAL ERPNSEEIWG TVEWHEAVLT VPVSYEFEHA LAVTV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.