Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT4G11750.1 | Thale cress | cytosol | 58.84 | 60.36 |
AT4G11745.1 | Thale cress | cytosol | 37.12 | 51.76 |
CDX98384 | Canola | plastid | 38.38 | 48.1 |
AT4G39560.1 | Thale cress | plastid | 31.31 | 46.62 |
AT4G34170.1 | Thale cress | cytosol | 33.59 | 45.39 |
AT5G49000.2 | Thale cress | nucleus | 42.17 | 44.89 |
AT1G77880.1 | Thale cress | cytosol | 14.65 | 44.62 |
AT4G39580.1 | Thale cress | cytosol | 41.67 | 44.0 |
AT4G39550.1 | Thale cress | nucleus | 43.43 | 43.88 |
AT1G19930.1 | Thale cress | cytosol | 37.63 | 43.31 |
AT5G38670.1 | Thale cress | cytosol, plastid | 31.82 | 43.3 |
AT4G39600.2 | Thale cress | plastid | 39.9 | 41.8 |
AT4G39570.1 | Thale cress | nucleus, plastid | 41.41 | 41.52 |
AT5G38680.1 | Thale cress | cytosol | 37.12 | 41.18 |
AT4G05620.1 | Thale cress | plastid | 13.64 | 40.91 |
AT5G51250.1 | Thale cress | cytosol | 37.37 | 40.22 |
AT3G08810.1 | Thale cress | nucleus | 34.6 | 39.94 |
AT4G23580.1 | Thale cress | cytosol | 37.63 | 38.9 |
AT3G43710.1 | Thale cress | cytosol | 37.12 | 38.89 |
AT1G60570.1 | Thale cress | cytosol | 37.12 | 38.58 |
AT4G39290.1 | Thale cress | cytosol | 35.35 | 38.36 |
AT1G61540.1 | Thale cress | cytosol | 38.89 | 38.31 |
AT4G39590.1 | Thale cress | plastid | 38.64 | 38.06 |
AT5G48990.1 | Thale cress | cytosol, plastid | 35.61 | 37.9 |
AT4G33900.1 | Thale cress | cytosol | 35.61 | 37.2 |
AT4G25710.1 | Thale cress | cytosol | 36.62 | 37.18 |
AT2G03460.1 | Thale cress | plastid | 23.23 | 35.8 |
AT3G06570.1 | Thale cress | cytosol, plastid | 35.1 | 35.64 |
AT5G48980.1 | Thale cress | nucleus | 35.35 | 35.09 |
AT2G20380.1 | Thale cress | cytosol | 29.55 | 33.62 |
AT3G09750.1 | Thale cress | mitochondrion | 13.13 | 32.3 |
Protein Annotations
Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:826783 | ProteinID:AEE83047.1 | ArrayExpress:AT4G11770 | EnsemblPlantsGene:AT4G11770 |
RefSeq:AT4G11770 | TAIR:AT4G11770 | RefSeq:AT4G11770-TAIR-G | EnsemblPlants:AT4G11770.1 | TAIR:AT4G11770.1 | Unigene:At.65364 |
ProteinID:CAB39948.1 | ProteinID:CAB78220.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_192914.1 |
PFAM:PF00646 | PFAM:PF01344 | PFscan:PS50181 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q9T0E4 |
SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00000A3DD9 | SEG:seg |
Description
Putative F-box/kelch-repeat protein At4g11770 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0E4]
Coordinates
chr4:-:7082279..7083469
Molecular Weight (calculated)
45992.3 Da
IEP (calculated)
9.839
GRAVY (calculated)
-0.185
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNGIKSSPC NMPYLPDDLL LNILGRVSRL YYPILSLVSK RFRSLVGSLE LYKIRTLLGR RTENCLYLSL RFSYGSNPRW FTLCRRPTRT PSPEPNLKSR
101: WFTSCFRPIL TNLTRATSKE EKKLSENLMV SIPTSNDCPL SGLTCNTIGS YIYMIGGYIN GVLSSRVFFL DCRSHTWHEA PSMQVARKSP LVNVLDGKIY
201: VVEGWRGSDY SNLIEIFDPK TQKWEHVPSP SAEMRGRYIS KGLVYEEKLY LFGDKNVVYK PKESRWDALG FDMNLWLVSY GSSCVIDNVC YMVFYKRLIW
301: YDSEVRYWRV LKGLEKLPKL RHRRSCIRMV DYGGKIAILW EKKVRVVGSD KKMIWCTEIA LERRSAHKIY GKIEWCDVVL TVPKSCSLLE FIAVTI
101: WFTSCFRPIL TNLTRATSKE EKKLSENLMV SIPTSNDCPL SGLTCNTIGS YIYMIGGYIN GVLSSRVFFL DCRSHTWHEA PSMQVARKSP LVNVLDGKIY
201: VVEGWRGSDY SNLIEIFDPK TQKWEHVPSP SAEMRGRYIS KGLVYEEKLY LFGDKNVVYK PKESRWDALG FDMNLWLVSY GSSCVIDNVC YMVFYKRLIW
301: YDSEVRYWRV LKGLEKLPKL RHRRSCIRMV DYGGKIAILW EKKVRVVGSD KKMIWCTEIA LERRSAHKIY GKIEWCDVVL TVPKSCSLLE FIAVTI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.