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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G11750.1 Thale cress cytosol 58.84 60.36
AT4G11745.1 Thale cress cytosol 37.12 51.76
CDX98384 Canola plastid 38.38 48.1
AT4G39560.1 Thale cress plastid 31.31 46.62
AT4G34170.1 Thale cress cytosol 33.59 45.39
AT5G49000.2 Thale cress nucleus 42.17 44.89
AT1G77880.1 Thale cress cytosol 14.65 44.62
AT4G39580.1 Thale cress cytosol 41.67 44.0
AT4G39550.1 Thale cress nucleus 43.43 43.88
AT1G19930.1 Thale cress cytosol 37.63 43.31
AT5G38670.1 Thale cress cytosol, plastid 31.82 43.3
AT4G39600.2 Thale cress plastid 39.9 41.8
AT4G39570.1 Thale cress nucleus, plastid 41.41 41.52
AT5G38680.1 Thale cress cytosol 37.12 41.18
AT4G05620.1 Thale cress plastid 13.64 40.91
AT5G51250.1 Thale cress cytosol 37.37 40.22
AT3G08810.1 Thale cress nucleus 34.6 39.94
AT4G23580.1 Thale cress cytosol 37.63 38.9
AT3G43710.1 Thale cress cytosol 37.12 38.89
AT1G60570.1 Thale cress cytosol 37.12 38.58
AT4G39290.1 Thale cress cytosol 35.35 38.36
AT1G61540.1 Thale cress cytosol 38.89 38.31
AT4G39590.1 Thale cress plastid 38.64 38.06
AT5G48990.1 Thale cress cytosol, plastid 35.61 37.9
AT4G33900.1 Thale cress cytosol 35.61 37.2
AT4G25710.1 Thale cress cytosol 36.62 37.18
AT2G03460.1 Thale cress plastid 23.23 35.8
AT3G06570.1 Thale cress cytosol, plastid 35.1 35.64
AT5G48980.1 Thale cress nucleus 35.35 35.09
AT2G20380.1 Thale cress cytosol 29.55 33.62
AT3G09750.1 Thale cress mitochondrion 13.13 32.3
Protein Annotations
Gene3D:2.120.10.80MapMan:35.1EntrezGene:826783ProteinID:AEE83047.1ArrayExpress:AT4G11770EnsemblPlantsGene:AT4G11770
RefSeq:AT4G11770TAIR:AT4G11770RefSeq:AT4G11770-TAIR-GEnsemblPlants:AT4G11770.1TAIR:AT4G11770.1Unigene:At.65364
ProteinID:CAB39948.1ProteinID:CAB78220.1InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR001810InterPro:IPR015915InterPro:Kelch-typ_b-propellerInterPro:Kelch_1RefSeq:NP_192914.1
PFAM:PF00646PFAM:PF01344PFscan:PS50181PANTHER:PTHR24414PANTHER:PTHR24414:SF23UniProt:Q9T0E4
SMART:SM00256SMART:SM00612SUPFAM:SSF117281SUPFAM:SSF81383UniParc:UPI00000A3DD9SEG:seg
Description
Putative F-box/kelch-repeat protein At4g11770 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0E4]
Coordinates
chr4:-:7082279..7083469
Molecular Weight (calculated)
45992.3 Da
IEP (calculated)
9.839
GRAVY (calculated)
-0.185
Length
396 amino acids
Sequence
(BLAST)
001: MMNGIKSSPC NMPYLPDDLL LNILGRVSRL YYPILSLVSK RFRSLVGSLE LYKIRTLLGR RTENCLYLSL RFSYGSNPRW FTLCRRPTRT PSPEPNLKSR
101: WFTSCFRPIL TNLTRATSKE EKKLSENLMV SIPTSNDCPL SGLTCNTIGS YIYMIGGYIN GVLSSRVFFL DCRSHTWHEA PSMQVARKSP LVNVLDGKIY
201: VVEGWRGSDY SNLIEIFDPK TQKWEHVPSP SAEMRGRYIS KGLVYEEKLY LFGDKNVVYK PKESRWDALG FDMNLWLVSY GSSCVIDNVC YMVFYKRLIW
301: YDSEVRYWRV LKGLEKLPKL RHRRSCIRMV DYGGKIAILW EKKVRVVGSD KKMIWCTEIA LERRSAHKIY GKIEWCDVVL TVPKSCSLLE FIAVTI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.