Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84184 | Canola | cytosol, nucleus, vacuole | 18.77 | 51.89 |
| AT4G23580.1 | Thale cress | cytosol | 62.46 | 47.78 |
| AT4G33900.1 | Thale cress | cytosol | 61.09 | 47.23 |
| AT4G39290.1 | Thale cress | cytosol | 49.49 | 39.73 |
| AT3G43710.1 | Thale cress | cytosol | 47.44 | 36.77 |
| AT4G39560.1 | Thale cress | plastid | 32.42 | 35.71 |
| AT4G39580.1 | Thale cress | cytosol | 43.69 | 34.13 |
| AT5G49000.2 | Thale cress | nucleus | 43.0 | 33.87 |
| AT5G38670.1 | Thale cress | cytosol, plastid | 33.45 | 33.68 |
| AT4G11770.1 | Thale cress | cytosol | 45.39 | 33.59 |
| AT5G51250.1 | Thale cress | cytosol | 41.98 | 33.42 |
| AT4G39550.1 | Thale cress | nucleus | 44.37 | 33.16 |
| AT1G19930.1 | Thale cress | cytosol | 38.91 | 33.14 |
| AT5G38680.1 | Thale cress | cytosol | 38.91 | 31.93 |
| AT1G60570.1 | Thale cress | cytosol | 40.61 | 31.23 |
| AT4G11750.1 | Thale cress | cytosol | 40.96 | 31.09 |
| AT4G39570.1 | Thale cress | nucleus, plastid | 41.64 | 30.89 |
| AT2G03460.1 | Thale cress | plastid | 26.96 | 30.74 |
| AT4G39600.2 | Thale cress | plastid | 39.59 | 30.69 |
| AT3G09750.1 | Thale cress | mitochondrion | 16.38 | 29.81 |
| AT4G25710.1 | Thale cress | cytosol | 39.59 | 29.74 |
| AT1G61540.1 | Thale cress | cytosol | 40.27 | 29.35 |
| AT1G77880.1 | Thale cress | cytosol | 12.97 | 29.23 |
| AT4G05620.1 | Thale cress | plastid | 12.97 | 28.79 |
| AT4G39590.1 | Thale cress | plastid | 38.91 | 28.36 |
| AT3G08810.1 | Thale cress | nucleus | 32.76 | 27.99 |
| AT5G48990.1 | Thale cress | cytosol, plastid | 35.49 | 27.96 |
| AT4G11745.1 | Thale cress | cytosol | 26.96 | 27.82 |
| AT3G06570.1 | Thale cress | cytosol, plastid | 35.15 | 26.41 |
| AT5G48980.1 | Thale cress | nucleus | 35.49 | 26.07 |
| AT2G20380.1 | Thale cress | cytosol | 28.33 | 23.85 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:829565 | ProteinID:AEE86336.1 | ArrayExpress:AT4G34170 | EnsemblPlantsGene:AT4G34170 |
| RefSeq:AT4G34170 | TAIR:AT4G34170 | RefSeq:AT4G34170-TAIR-G | EnsemblPlants:AT4G34170.1 | TAIR:AT4G34170.1 | Unigene:At.54597 |
| ProteinID:CAA17555.1 | ProteinID:CAB80134.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_195143.1 |
| UniProt:O49488 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00612 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI000009CE2D | : | : | : |
Description
Putative F-box/kelch-repeat protein At4g34170 [Source:UniProtKB/Swiss-Prot;Acc:O49488]
Coordinates
chr4:+:16368087..16369025
Molecular Weight (calculated)
33450.2 Da
IEP (calculated)
7.124
GRAVY (calculated)
-0.247
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGEELPVK TMLMLHDDLI LNCLARVSRS NHPTLSLVCK RFHSLLASVE LYQTRTLLGR TERCFYRQYS SRKILVQILS PNSTSAGIAV VGPNIDAIGG
101: GIKSNTLSSV MVMDSRSHTW REAPSMRVPR MFPSVCTLDG KIYVMGGCDN LDSTNWMEVF DTKTQTWEFL QIPSEEIFGG SAYESVRYEG TVYVWSEKKD
201: VTYKLHEGRW SAADMSANGW GWPGSSYCVI ENVLYSCFVH KIRWYDPKER VWTPLKGLPS LPCNGHVKLA DYGEKMVILW EKYVDVDEKK MIW
101: GIKSNTLSSV MVMDSRSHTW REAPSMRVPR MFPSVCTLDG KIYVMGGCDN LDSTNWMEVF DTKTQTWEFL QIPSEEIFGG SAYESVRYEG TVYVWSEKKD
201: VTYKLHEGRW SAADMSANGW GWPGSSYCVI ENVLYSCFVH KIRWYDPKER VWTPLKGLPS LPCNGHVKLA DYGEKMVILW EKYVDVDEKK MIW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.