Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G263400.1 | Wheat | cytosol | 95.58 | 95.05 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 95.58 | 93.51 |
| Os03t0196500-00 | Rice | cytosol | 82.32 | 83.71 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 82.32 | 80.11 |
| Zm00001d028159_P001 | Maize | cytosol | 70.17 | 71.35 |
| OQU93068 | Sorghum | cytosol | 73.48 | 66.17 |
| Zm00001d048185_P001 | Maize | cytosol | 64.64 | 65.0 |
| CDX86323 | Canola | cytosol | 40.33 | 47.71 |
| Bra020714.1-P | Field mustard | cytosol | 40.88 | 47.44 |
| KRH14138 | Soybean | nucleus | 40.33 | 47.4 |
| KRH73996 | Soybean | cytosol | 40.33 | 47.4 |
| CDY19964 | Canola | cytosol | 39.78 | 47.37 |
| AT5G48170.1 | Thale cress | cytosol | 40.88 | 47.13 |
| CDY54510 | Canola | cytosol | 39.78 | 47.06 |
| CDY48737 | Canola | cytosol | 40.33 | 46.79 |
| CDY05699 | Canola | cytosol | 40.33 | 46.79 |
| Bra036183.1-P | Field mustard | cytosol | 39.23 | 46.71 |
| Bra037508.1-P | Field mustard | cytosol | 40.33 | 46.5 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 43.65 | 46.47 |
| PGSC0003DMT400048479 | Potato | cytosol | 38.67 | 46.05 |
| CDY00072 | Canola | cytosol | 38.67 | 46.05 |
| PGSC0003DMT400015675 | Potato | cytosol | 41.44 | 45.73 |
| Solyc07g047680.1.1 | Tomato | cytosol | 41.99 | 45.51 |
| Solyc05g040040.1.1 | Tomato | cytosol | 38.12 | 45.39 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009937 |
| GO:GO:0009987 | GO:GO:0019005 | GO:GO:0048831 | InterPro:IPR001810 | PFAM:PF12937 | PANTHER:PTHR12874 |
| PANTHER:PTHR12874:SF10 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS4D01G263600 | EnsemblPlants:TraesCS4D01G263600.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr4D:+:434466883..434467428
Molecular Weight (calculated)
18714.5 Da
IEP (calculated)
8.763
GRAVY (calculated)
0.130
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGPPAAPRQ EEDAVVVTEL EVRVQLLASG GGAYNINDNA DILSEILARL DGRSLASAAS VCRLWAAVSR RDAVWEALCL RHVGPASGPA AGHATRTVVA
101: ALGGYRRLYR LCLGPALDRL GRAGALAHAQ ARARLSLSLS LSLFSIDCYE RLGGGGGGSA GAGRQQPPSS LLFLCKPVDV S
101: ALGGYRRLYR LCLGPALDRL GRAGALAHAQ ARARLSLSLS LSLFSIDCYE RLGGGGGGSA GAGRQQPPSS LLFLCKPVDV S
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.