Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020714.1-P | Field mustard | cytosol | 93.63 | 94.23 |
| CDY48737 | Canola | cytosol | 92.99 | 93.59 |
| CDY05699 | Canola | cytosol | 92.36 | 92.95 |
| CDY19964 | Canola | cytosol | 85.99 | 88.82 |
| Bra036183.1-P | Field mustard | cytosol | 85.35 | 88.16 |
| CDY00072 | Canola | cytosol | 85.35 | 88.16 |
| CDY54510 | Canola | cytosol | 84.08 | 86.27 |
| CDX86323 | Canola | cytosol | 83.44 | 85.62 |
| Bra037508.1-P | Field mustard | cytosol | 84.08 | 84.08 |
| KRH14138 | Soybean | nucleus | 52.87 | 53.9 |
| KRH73996 | Soybean | cytosol | 50.96 | 51.95 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 56.05 | 51.76 |
| PGSC0003DMT400048479 | Potato | cytosol | 49.68 | 51.32 |
| Solyc05g040040.1.1 | Tomato | cytosol | 49.68 | 51.32 |
| PGSC0003DMT400015675 | Potato | cytosol | 50.32 | 48.17 |
| Solyc07g047680.1.1 | Tomato | cytosol | 50.96 | 47.9 |
| Zm00001d048185_P001 | Maize | cytosol | 49.04 | 42.78 |
| Zm00001d028159_P001 | Maize | cytosol | 47.77 | 42.13 |
| Os03t0196500-00 | Rice | cytosol | 47.13 | 41.57 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 49.04 | 41.4 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 47.77 | 41.21 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 47.13 | 40.88 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 47.77 | 40.54 |
| OQU93068 | Sorghum | cytosol | 45.86 | 35.82 |
| AT4G24210.1 | Thale cress | cytosol | 22.29 | 23.18 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | EntrezGene:834869 | UniProt:A0A178UIU3 | ProteinID:AED95628.1 |
| ArrayExpress:AT5G48170 | EnsemblPlantsGene:AT5G48170 | RefSeq:AT5G48170 | TAIR:AT5G48170 | RefSeq:AT5G48170-TAIR-G | EnsemblPlants:AT5G48170.1 |
| TAIR:AT5G48170.1 | ProteinID:BAA96997.1 | EMBL:BT011771 | EMBL:BT012391 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009937 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0019005 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0048831 | InterPro:IPR001810 |
| RefSeq:NP_199628.1 | ProteinID:OAO93906.1 | PFAM:PF12937 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | UniProt:Q9LUB6 |
| Symbol:SLY2 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI00000A7E50 | : | : |
Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
Coordinates
chr5:-:19532270..19533390
Molecular Weight (calculated)
17967.0 Da
IEP (calculated)
9.566
GRAVY (calculated)
0.058
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.