Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G263600.1 | Wheat | cytosol | 95.05 | 95.58 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 93.41 | 91.89 |
| Os03t0196500-00 | Rice | cytosol | 81.87 | 83.71 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 81.87 | 80.11 |
| Zm00001d028159_P001 | Maize | cytosol | 70.33 | 71.91 |
| OQU93068 | Sorghum | cytosol | 73.63 | 66.67 |
| Zm00001d048185_P001 | Maize | cytosol | 64.84 | 65.56 |
| KRH73996 | Soybean | cytosol | 40.66 | 48.05 |
| KRH14138 | Soybean | nucleus | 40.66 | 48.05 |
| AT5G48170.1 | Thale cress | cytosol | 41.21 | 47.77 |
| CDX86323 | Canola | cytosol | 40.11 | 47.71 |
| Bra020714.1-P | Field mustard | cytosol | 40.66 | 47.44 |
| CDY19964 | Canola | cytosol | 39.56 | 47.37 |
| CDY54510 | Canola | cytosol | 39.56 | 47.06 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 43.96 | 47.06 |
| CDY48737 | Canola | cytosol | 40.11 | 46.79 |
| CDY05699 | Canola | cytosol | 40.11 | 46.79 |
| Bra036183.1-P | Field mustard | cytosol | 39.01 | 46.71 |
| Bra037508.1-P | Field mustard | cytosol | 40.11 | 46.5 |
| CDY00072 | Canola | cytosol | 38.46 | 46.05 |
| PGSC0003DMT400048479 | Potato | cytosol | 37.91 | 45.39 |
| Solyc05g040040.1.1 | Tomato | cytosol | 37.91 | 45.39 |
| PGSC0003DMT400015675 | Potato | cytosol | 40.11 | 44.51 |
| Solyc07g047680.1.1 | Tomato | cytosol | 40.66 | 44.31 |
| TraesCS3B01G068100.1 | Wheat | nucleus | 25.82 | 21.46 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009937 |
| GO:GO:0009987 | GO:GO:0019005 | GO:GO:0048831 | InterPro:IPR001810 | PFAM:PF12937 | PANTHER:PTHR12874 |
| PANTHER:PTHR12874:SF10 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS4B01G263400 | EnsemblPlants:TraesCS4B01G263400.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr4B:+:534327195..534327743
Molecular Weight (calculated)
18785.8 Da
IEP (calculated)
9.118
GRAVY (calculated)
0.256
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MCMGGPPAVP RQEVGAVVVT ELEVRVQLLA GGGGAYNIND NADILSEILA RLDGRSLASA ASVCRLWAAV SRRDAVWEAL CLRHVGPASG PAAGHATRAV
101: VAALGGYRRL YRLCLGPALD RLGRAGALAH AQARARLSLS LSLSLFSIDC YERLGGGGAG AGASRQQPPS SLLFLCKPVD VS
101: VAALGGYRRL YRLCLGPALD RLGRAGALAH AQARARLSLS LSLSLFSIDC YERLGGGGAG AGASRQQPPS SLLFLCKPVD VS
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.