Factsheet for Os03t0196500-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G263600.1	Wheat	cytosol	83.71	82.32
TraesCS4B01G263400.1	Wheat	cytosol	83.71	81.87
TraesCS4A01G042900.1	Wheat	cytosol	84.27	81.08
HORVU4Hr1G071100.2	Barley	cytosol, mitochondrion	78.09	74.73
Zm00001d028159_P001	Maize	cytosol	73.03	73.03
OQU93068	Sorghum	cytosol	76.97	68.16
Zm00001d048185_P001	Maize	cytosol	67.42	66.67
CDX86323	Canola	cytosol	41.01	47.71
PGSC0003DMT400015675	Potato	cytosol	43.82	47.56
Bra020714.1-P	Field mustard	cytosol	41.57	47.44
KRH14138	Soybean	nucleus	41.01	47.4
KRH73996	Soybean	cytosol	41.01	47.4
CDY19964	Canola	cytosol	40.45	47.37
AT5G48170.1	Thale cress	cytosol	41.57	47.13
CDY54510	Canola	cytosol	40.45	47.06
CDY48737	Canola	cytosol	41.01	46.79
CDY05699	Canola	cytosol	41.01	46.79
Bra036183.1-P	Field mustard	cytosol	39.89	46.71
Solyc07g047680.1.1	Tomato	cytosol	43.82	46.71
Bra037508.1-P	Field mustard	cytosol	41.01	46.5
VIT_12s0057g00720.t01	Wine grape	cytosol	44.38	46.47
PGSC0003DMT400048479	Potato	cytosol	39.33	46.05
Solyc05g040040.1.1	Tomato	cytosol	39.33	46.05
CDY00072	Canola	cytosol	39.33	46.05

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.6.2.3	MapMan:19.2.2.8.1.4.1	EntrezGene:4331940	ProteinID:ABF94456.1	ProteinID:BAF11178.1
ProteinID:BAS82772.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0000151	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009719	GO:GO:0009740
GO:GO:0009937	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0043161	GO:GO:0048831
InterPro:IPR001810	EnsemblPlantsGene:Os03g0196500	EnsemblPlants:Os03t0196500-00	PFAM:PF12937	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10
UniProt:Q10QH2	SUPFAM:SSF81383	UniParc:UPI0000DB48AE	RefSeq:XP_015630015.1	SEG:seg	:

Description

F-box protein 131Cyclin-like F-box domain containing protein. (Os03t0196500-00)

Coordinates

chr3:-:5049125..5049901

Molecular Weight (calculated)

18612.7 Da

IEP (calculated)

9.170

GRAVY (calculated)

0.185

Length

178 amino acids

Sequence
(BLAST)

001: MGARPVPRRE EVVVVTELEL RMQLLGGGGN CYNINDNADL LAEILARLDG RSLAAAACVC RLWAAVARRD AVWEALCLRH VGPASGPTAG PATRAVVAAL
101: GGYRRLYRLC LGPALDRLGR GGGAIAHAHA RARLSLSLSL SLFSIDCYER LGGGGGAGAG RQPQPSSLLF LCKPVDVS

Best Arabidopsis Sequence Match ( AT5G48170.1 )
(BLAST)

001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV

Arabidopsis Description

SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.