Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028159_P001 | Maize | cytosol | 83.89 | 84.83 |
| Os03t0196500-00 | Rice | cytosol | 66.67 | 67.42 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 65.56 | 64.84 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 65.0 | 64.64 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 64.44 | 62.7 |
| OQU93068 | Sorghum | cytosol | 69.44 | 62.19 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 63.89 | 61.83 |
| CDX86323 | Canola | cytosol | 42.22 | 49.67 |
| CDY54510 | Canola | cytosol | 42.22 | 49.67 |
| AT5G48170.1 | Thale cress | cytosol | 42.78 | 49.04 |
| Bra037508.1-P | Field mustard | cytosol | 42.78 | 49.04 |
| Bra020714.1-P | Field mustard | cytosol | 42.22 | 48.72 |
| CDY19964 | Canola | cytosol | 41.11 | 48.68 |
| CDY48737 | Canola | cytosol | 41.67 | 48.08 |
| CDY05699 | Canola | cytosol | 41.67 | 48.08 |
| KRH14138 | Soybean | nucleus | 41.11 | 48.05 |
| Bra036183.1-P | Field mustard | cytosol | 40.56 | 48.03 |
| KRH73996 | Soybean | cytosol | 40.56 | 47.4 |
| CDY00072 | Canola | cytosol | 40.0 | 47.37 |
| PGSC0003DMT400048479 | Potato | cytosol | 39.44 | 46.71 |
| Solyc05g040040.1.1 | Tomato | cytosol | 39.44 | 46.71 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 43.89 | 46.47 |
| PGSC0003DMT400015675 | Potato | cytosol | 41.11 | 45.12 |
| Solyc07g047680.1.1 | Tomato | cytosol | 41.11 | 44.31 |
| Zm00001d016973_P001 | Maize | nucleus | 23.89 | 18.22 |
| Zm00001d050903_P001 | Maize | cytosol | 26.11 | 12.3 |
Protein Annotations
| EMBL:BT066489 | EnsemblPlants:Zm00001d048185_P001 | EnsemblPlants:Zm00001d048185_T001 | EnsemblPlantsGene:Zm00001d048185 | EntrezGene:100284224 | Gene3D:1.20.1280.50 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 |
| PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | PFAM:PF12937 | ProteinID:AQL09081.1 | SEG:seg | SUPFAM:SSF81383 |
| UniParc:UPI000195C95B | UniProt:C0PDX0 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | : | : |
Description
F-box protein SNE
Coordinates
chr9:+:151986704..151987246
Molecular Weight (calculated)
18634.5 Da
IEP (calculated)
8.493
GRAVY (calculated)
0.236
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGVGEAVEV TELELRIQLM DGGSYNINDN ADLLAEILAR LDGRSLAAAA GVCRLWAAVA RRDAVWEALC LRHVGPAPSA AAAAAVAGPA TRAVVAALGG
101: YRRLYRLCLG PALDRLAQAQ AQVQAARAHR LSLSLSLSLF SIDCYERLGS GGGPSAGASA PGRRQQPSSL LFLCKPVDVS
101: YRRLYRLCLG PALDRLAQAQ AQVQAARAHR LSLSLSLSLF SIDCYERLGS GGGPSAGASA PGRRQQPSSL LFLCKPVDVS
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.