Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g047680.1.1 | Tomato | cytosol | 87.2 | 85.63 |
| PGSC0003DMT400048479 | Potato | cytosol | 70.12 | 75.66 |
| KRH14138 | Soybean | nucleus | 57.93 | 61.69 |
| KRH73996 | Soybean | cytosol | 56.71 | 60.39 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 60.98 | 58.82 |
| CDX86323 | Canola | cytosol | 48.78 | 52.29 |
| CDY19964 | Canola | cytosol | 48.17 | 51.97 |
| CDY54510 | Canola | cytosol | 48.17 | 51.63 |
| Bra036183.1-P | Field mustard | cytosol | 47.56 | 51.32 |
| CDY00072 | Canola | cytosol | 47.56 | 51.32 |
| Bra037508.1-P | Field mustard | cytosol | 48.78 | 50.96 |
| Bra020714.1-P | Field mustard | cytosol | 48.17 | 50.64 |
| CDY48737 | Canola | cytosol | 48.17 | 50.64 |
| AT5G48170.1 | Thale cress | cytosol | 48.17 | 50.32 |
| CDY05699 | Canola | cytosol | 47.56 | 50.0 |
| Os03t0196500-00 | Rice | cytosol | 47.56 | 43.82 |
| Zm00001d028159_P001 | Maize | cytosol | 45.73 | 42.13 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 45.73 | 41.44 |
| Zm00001d048185_P001 | Maize | cytosol | 45.12 | 41.11 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 44.51 | 40.11 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 45.12 | 40.0 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 45.12 | 39.78 |
| OQU93068 | Sorghum | cytosol | 44.51 | 36.32 |
| PGSC0003DMT400008560 | Potato | nucleus | 28.66 | 22.71 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400015675 | EnsemblPlantsGene:PGSC0003DMG400006123 | EntrezGene:102589181 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 |
| PFAM:PF12937 | PGSC:PGSC0003DMG400006123 | RefSeq:XP_006362999.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI000296BC4A |
| UniProt:M1A6D8 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | : | : | : |
Description
F-box protein SNE [Source:PGSC_GENE;Acc:PGSC0003DMG400006123]
Coordinates
chr7:+:44236645..44237448
Molecular Weight (calculated)
18162.2 Da
IEP (calculated)
8.210
GRAVY (calculated)
0.119
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTNFFINDN EDVLIEILKR LDGRSLGVAA CVCKLWCGIA RNDSLWEHLC FRHVSPPLEG VRTVVLALGG YRRLYMVCVR PVLNRLRKWR PIGMESDSEI
101: VRRVYWTRHE VELSLSLFCV DYYERVLLSG GSGDGGGGGK HGGGDAAAAP CVSSLMFLCK AVNV
101: VRRVYWTRHE VELSLSLFCV DYYERVLLSG GSGDGGGGGK HGGGDAAAAP CVSSLMFLCK AVNV
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.