Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016973_P001 | Maize | nucleus | 46.34 | 75.0 |
| OQU85206 | Sorghum | nucleus, plastid | 40.05 | 57.3 |
| TraesCS3B01G068100.1 | Wheat | nucleus | 30.63 | 53.42 |
| TraesCS3A01G055700.1 | Wheat | nucleus | 29.58 | 52.07 |
| GSMUA_Achr9P22610_001 | Banana | cytosol, nucleus, plastid | 19.9 | 46.63 |
| CDY03475 | Canola | nucleus | 15.45 | 40.41 |
| Bra013776.1-P | Field mustard | nucleus | 15.18 | 39.73 |
| CDY34266 | Canola | nucleus | 15.18 | 39.73 |
| KRH15421 | Soybean | cytosol | 14.66 | 38.89 |
| VIT_07s0129g01000.t01 | Wine grape | cytosol | 18.06 | 37.5 |
| KRH05620 | Soybean | cytosol | 16.75 | 36.78 |
| KRH52046 | Soybean | cytosol | 16.49 | 36.21 |
| AT4G24210.1 | Thale cress | cytosol | 14.14 | 35.76 |
| KRH61359 | Soybean | cytosol | 16.23 | 33.88 |
| VIT_18s0001g09700.t01 | Wine grape | nucleus | 16.23 | 33.7 |
| Solyc04g078390.1.1 | Tomato | cytosol, mitochondrion, nucleus | 15.71 | 27.78 |
| Zm00001d028159_P001 | Maize | cytosol | 12.57 | 26.97 |
| Zm00001d048185_P001 | Maize | cytosol | 12.3 | 26.11 |
| PGSC0003DMT400008560 | Potato | nucleus | 13.35 | 24.64 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:1.20.190.20 | MapMan:11.6.2.3 | InterPro:14-3-3 | InterPro:14-3-3_dom_sf | InterPro:14-3-3_domain |
| MapMan:19.2.2.8.1.4.1 | MapMan:19.2.2.8.1.4.6 | UniProt:A0A1D6Q3S6 | ProteinID:AQK53215.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0019904 | InterPro:IPR001810 | InterPro:IPR036815 |
| PFAM:PF00244 | PFAM:PF00646 | PRINTS:PR00305 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | SUPFAM:SSF48445 |
| SUPFAM:SSF81383 | UniParc:UPI00084448EA | EnsemblPlantsGene:Zm00001d050903 | EnsemblPlants:Zm00001d050903_P001 | EnsemblPlants:Zm00001d050903_T001 | SEG:seg |
Description
F-box protein GID2
Coordinates
chr4:+:129344494..129346979
Molecular Weight (calculated)
41985.9 Da
IEP (calculated)
9.049
GRAVY (calculated)
-0.482
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MKCRSDSSGG GDDHRAPAPA ATGVGGGSPV GEPSKKQRTE EPVASSSMAG ECSSSFLQAP PPLAEQLPQD ARVGEQPPPG SEAGGDEQAR VPDLGEDLVF
101: EVLMRAEART LAAAACVSRG WRLLARDERL WEAACVREWA YTGFSEQMLR SVVLSLGGFR RLHEMYIRPV QQRAAGAPPG QQRRQLPVRM GRDQVQVSLS
201: LLSTSFFLKM PNAPPPPPKD KDRDRDKNGG GQSFNSKISL EIRVDSEKYE ELIEFMEKVA KTVDSEEHYV LSIAYKIVME PNVLHGASYP PLSRGKKAVS
301: TWTVSLSLRT TITRLKLNSA RSVMESSSSL IPTVSASLTA AESKVFYLKM KGDYYGYLAE FETGSRRKDA ARIPWWHTNL LR
101: EVLMRAEART LAAAACVSRG WRLLARDERL WEAACVREWA YTGFSEQMLR SVVLSLGGFR RLHEMYIRPV QQRAAGAPPG QQRRQLPVRM GRDQVQVSLS
201: LLSTSFFLKM PNAPPPPPKD KDRDRDKNGG GQSFNSKISL EIRVDSEKYE ELIEFMEKVA KTVDSEEHYV LSIAYKIVME PNVLHGASYP PLSRGKKAVS
301: TWTVSLSLRT TITRLKLNSA RSVMESSSSL IPTVSASLTA AESKVFYLKM KGDYYGYLAE FETGSRRKDA ARIPWWHTNL LR
001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
Arabidopsis Description
GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.