Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra013776.1-P | Field mustard | nucleus | 41.72 | 46.58 |
CDY03475 | Canola | nucleus | 41.72 | 46.58 |
CDY34266 | Canola | nucleus | 41.72 | 46.58 |
KRH15421 | Soybean | cytosol | 41.1 | 46.53 |
VIT_07s0129g01000.t01 | Wine grape | cytosol | 49.69 | 44.02 |
AT4G24210.1 | Thale cress | cytosol | 40.49 | 43.71 |
VIT_18s0001g09700.t01 | Wine grape | nucleus | 47.24 | 41.85 |
KRH52046 | Soybean | cytosol | 42.33 | 39.66 |
KRH61359 | Soybean | cytosol | 43.56 | 38.8 |
KRH05620 | Soybean | cytosol | 40.49 | 37.93 |
TraesCS3B01G068100.1 | Wheat | nucleus | 49.08 | 36.53 |
TraesCS3A01G055700.1 | Wheat | nucleus | 47.85 | 35.94 |
PGSC0003DMT400008560 | Potato | nucleus | 45.4 | 35.75 |
Solyc04g078390.1.1 | Tomato | cytosol, mitochondrion, nucleus | 45.4 | 34.26 |
Zm00001d016973_P001 | Maize | nucleus | 46.01 | 31.78 |
OQU85206 | Sorghum | nucleus, plastid | 44.79 | 27.34 |
Zm00001d050903_P001 | Maize | cytosol | 46.63 | 19.9 |
Protein Annotations
Gene3D:1.20.1280.50 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009845 |
GO:GO:0010162 | GO:GO:0019005 | EnsemblPlantsGene:GSMUA_Achr9G22610_001 | EnsemblPlants:GSMUA_Achr9P22610_001 | EnsemblPlants:GSMUA_Achr9T22610_001 | InterPro:IPR001810 |
UniProt:M0U2M0 | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | SUPFAM:SSF81383 |
UniParc:UPI00029520E0 | SEG:seg | : | : | : | : |
Description
Putative F-box protein GID2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22610_001]
Coordinates
chr9:-:27720160..27720651
Molecular Weight (calculated)
18139.0 Da
IEP (calculated)
10.774
GRAVY (calculated)
-0.446
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRRSIDGKE EKKNKRPRSA EVAAPEEAVS AAELGEDLLL EVLKRADART LGRAACVSRG WRRLAEDERL WEAVCTRDWV KVPCGKQQLR AVVLALGGFR
101: RLHSLYILPF LAPSAALPSP MTGRPHPQQR WGKDEVQLSL SLLSIGFFEK MIPNNNRGGR GGA
101: RLHSLYILPF LAPSAALPSP MTGRPHPQQR WGKDEVQLSL SLLSIGFFEK MIPNNNRGGR GGA
001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
Arabidopsis Description
GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.