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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
  • plastid 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G24210.1 GSMUA_Achr10P... AT1G14920.1 15155881
AT4G24210.1 GSMUA_Achr1P21300_001 AT1G14920.1 15155881
AT4G24210.1 GSMUA_Achr8P18250_001 AT1G14920.1 15155881
AT4G24210.1 GSMUA_Achr10P... AT1G14920.1 15161962
AT4G24210.1 GSMUA_Achr1P21300_001 AT1G14920.1 15161962
AT4G24210.1 GSMUA_Achr8P18250_001 AT1G14920.1 15161962
AT4G24210.1 GSMUA_Achr10P... AT1G14920.1 17194763
AT4G24210.1 GSMUA_Achr1P21300_001 AT1G14920.1 17194763
AT4G24210.1 GSMUA_Achr8P18250_001 AT1G14920.1 17194763
AT4G24210.1 GSMUA_Achr10P... AT2G01570.1 15155881
AT4G24210.1 GSMUA_Achr1P21300_001 AT2G01570.1 15155881
AT4G24210.1 GSMUA_Achr8P18250_001 AT2G01570.1 15155881
AT4G24210.1 GSMUA_Achr10P... AT2G01570.1 15161962
AT4G24210.1 GSMUA_Achr1P21300_001 AT2G01570.1 15161962
AT4G24210.1 GSMUA_Achr8P18250_001 AT2G01570.1 15161962
AT4G24210.1 GSMUA_Achr10P... AT2G01570.1 17194763
AT4G24210.1 GSMUA_Achr1P21300_001 AT2G01570.1 17194763
AT4G24210.1 GSMUA_Achr8P18250_001 AT2G01570.1 17194763
AT4G24210.1 GSMUA_Achr10P... AT3G05120.1 17194763
AT4G24210.1 GSMUA_Achr3P24930_001 AT3G05120.1 17194763
AT4G24210.1 GSMUA_Achr5P27430_001 AT3G05120.1 17194763
AT4G24210.1 GSMUA_Achr5P27450_001 AT3G05120.1 17194763
AT4G24210.1 GSMUA_Achr6P16090_001 AT3G05120.1 17194763
AT4G24210.1 GSMUA_Achr8P05910_001 AT3G05120.1 17194763
AT4G24210.1 GSMUA_Achr10P... AT3G05120.1 19500306
AT4G24210.1 GSMUA_Achr3P24930_001 AT3G05120.1 19500306
AT4G24210.1 GSMUA_Achr5P27430_001 AT3G05120.1 19500306
AT4G24210.1 GSMUA_Achr5P27450_001 AT3G05120.1 19500306
AT4G24210.1 GSMUA_Achr6P16090_001 AT3G05120.1 19500306
AT4G24210.1 GSMUA_Achr8P05910_001 AT3G05120.1 19500306
AT4G24210.1 GSMUA_Achr10P... AT3G63010.1 16709201
AT4G24210.1 GSMUA_Achr3P24930_001 AT3G63010.1 16709201
AT4G24210.1 GSMUA_Achr5P27430_001 AT3G63010.1 16709201
AT4G24210.1 GSMUA_Achr5P27450_001 AT3G63010.1 16709201
AT4G24210.1 GSMUA_Achr6P16090_001 AT3G63010.1 16709201
AT4G24210.1 GSMUA_Achr8P05910_001 AT3G63010.1 16709201
AT4G24210.1 GSMUA_Achr10P... AT3G63010.1 19500306
AT4G24210.1 GSMUA_Achr3P24930_001 AT3G63010.1 19500306
AT4G24210.1 GSMUA_Achr5P27430_001 AT3G63010.1 19500306
AT4G24210.1 GSMUA_Achr5P27450_001 AT3G63010.1 19500306
AT4G24210.1 GSMUA_Achr6P16090_001 AT3G63010.1 19500306
AT4G24210.1 GSMUA_Achr8P05910_001 AT3G63010.1 19500306
AT4G24210.1 GSMUA_Achr9P17620_001 AT4G02570.1 15161962
AT4G24210.1 GSMUA_Achr10P... AT5G27320.1 19500306
AT4G24210.1 GSMUA_Achr3P24930_001 AT5G27320.1 19500306
AT4G24210.1 GSMUA_Achr5P27430_001 AT5G27320.1 19500306
AT4G24210.1 GSMUA_Achr5P27450_001 AT5G27320.1 19500306
AT4G24210.1 GSMUA_Achr6P16090_001 AT5G27320.1 19500306
AT4G24210.1 GSMUA_Achr8P05910_001 AT5G27320.1 19500306
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra013776.1-P Field mustard nucleus 41.72 46.58
CDY03475 Canola nucleus 41.72 46.58
CDY34266 Canola nucleus 41.72 46.58
KRH15421 Soybean cytosol 41.1 46.53
VIT_07s0129g01000.t01 Wine grape cytosol 49.69 44.02
AT4G24210.1 Thale cress cytosol 40.49 43.71
VIT_18s0001g09700.t01 Wine grape nucleus 47.24 41.85
KRH52046 Soybean cytosol 42.33 39.66
KRH61359 Soybean cytosol 43.56 38.8
KRH05620 Soybean cytosol 40.49 37.93
TraesCS3B01G068100.1 Wheat nucleus 49.08 36.53
TraesCS3A01G055700.1 Wheat nucleus 47.85 35.94
PGSC0003DMT400008560 Potato nucleus 45.4 35.75
Solyc04g078390.1.1 Tomato cytosol, mitochondrion, nucleus 45.4 34.26
Zm00001d016973_P001 Maize nucleus 46.01 31.78
OQU85206 Sorghum nucleus, plastid 44.79 27.34
Zm00001d050903_P001 Maize cytosol 46.63 19.9
Protein Annotations
Gene3D:1.20.1280.50MapMan:11.6.2.3MapMan:19.2.2.8.1.4.1MapMan:19.2.2.8.1.4.6InterPro:F-box-like_dom_sfInterPro:F-box_dom
GO:GO:0000003GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0007275GO:GO:0008150GO:GO:0009791GO:GO:0009845
GO:GO:0010162GO:GO:0019005EnsemblPlantsGene:GSMUA_Achr9G22610_001EnsemblPlants:GSMUA_Achr9P22610_001EnsemblPlants:GSMUA_Achr9T22610_001InterPro:IPR001810
UniProt:M0U2M0PFAM:PF12937PFscan:PS50181PANTHER:PTHR12874PANTHER:PTHR12874:SF10SUPFAM:SSF81383
UniParc:UPI00029520E0SEG:seg::::
Description
Putative F-box protein GID2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22610_001]
Coordinates
chr9:-:27720160..27720651
Molecular Weight (calculated)
18139.0 Da
IEP (calculated)
10.774
GRAVY (calculated)
-0.446
Length
163 amino acids
Sequence
(BLAST)
001: MKRRSIDGKE EKKNKRPRSA EVAAPEEAVS AAELGEDLLL EVLKRADART LGRAACVSRG WRRLAEDERL WEAVCTRDWV KVPCGKQQLR AVVLALGGFR
101: RLHSLYILPF LAPSAALPSP MTGRPHPQQR WGKDEVQLSL SLLSIGFFEK MIPNNNRGGR GGA
Best Arabidopsis Sequence Match ( AT4G24210.1 )
(BLAST)
001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
Arabidopsis Description
GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.