Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G068100.1 | Wheat | nucleus | 90.32 | 89.5 |
| Zm00001d016973_P001 | Maize | nucleus | 55.76 | 51.27 |
| GSMUA_Achr9P22610_001 | Banana | cytosol, nucleus, plastid | 35.94 | 47.85 |
| OQU85206 | Sorghum | nucleus, plastid | 53.92 | 43.82 |
| CDY03475 | Canola | nucleus | 26.27 | 39.04 |
| Bra013776.1-P | Field mustard | nucleus | 25.81 | 38.36 |
| CDY34266 | Canola | nucleus | 25.81 | 38.36 |
| KRH15421 | Soybean | cytosol | 25.35 | 38.19 |
| VIT_07s0129g01000.t01 | Wine grape | cytosol | 31.8 | 37.5 |
| KRH52046 | Soybean | cytosol | 28.57 | 35.63 |
| KRH05620 | Soybean | cytosol | 28.57 | 35.63 |
| AT4G24210.1 | Thale cress | cytosol | 23.5 | 33.77 |
| VIT_18s0001g09700.t01 | Wine grape | nucleus | 28.57 | 33.7 |
| KRH61359 | Soybean | cytosol | 27.65 | 32.79 |
| Zm00001d050903_P001 | Maize | cytosol | 52.07 | 29.58 |
| Solyc04g078390.1.1 | Tomato | cytosol, mitochondrion, nucleus | 27.19 | 27.31 |
| PGSC0003DMT400008560 | Potato | nucleus | 24.88 | 26.09 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 22.12 | 25.95 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G055700.1 | EnsemblPlantsGene:TraesCS3A01G055700 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | PFAM:PF12937 |
| SEG:seg | SUPFAM:SSF81383 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | MapMan:19.2.2.8.1.4.6 | : |
Description
No Description!
Coordinates
chr3A:-:32152342..32152995
Molecular Weight (calculated)
22922.8 Da
IEP (calculated)
10.208
GRAVY (calculated)
-0.764
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MKCPSGSSGG RDPWAPPPGS GGGGGGGSSE PAKKQQRTGS SSQADEASTS SSSSQPPPQQ PPAPDGGDVP YLGEDLMFEV LRRAEARTLA SAACVSRGWR
101: ALAQDERLWE AACVREWADL GFSEQQLRAV VLSLGGFRRL HAVSIRPIQR RRAGVPAAPA QERGRRQQPP ARLGRDQVQL SLSLFSIGFF QSMPNHPPPK
201: KKDEGDGNDK GGGGRCG
101: ALAQDERLWE AACVREWADL GFSEQQLRAV VLSLGGFRRL HAVSIRPIQR RRAGVPAAPA QERGRRQQPP ARLGRDQVQL SLSLFSIGFF QSMPNHPPPK
201: KKDEGDGNDK GGGGRCG
001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
Arabidopsis Description
GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.